RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, human

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-223	ENST00000545440	FAM163A	Q96GL9	167 aa	Predicted RBP	10.33	□□□□□ -0.76
SNHG1-223	ENST00000545440	PCMTD1	Q96MG8	357 aa	Predicted RBP	10.33	□□□□□ -0.76
SNHG1-223	ENST00000545440	FLAD1	Q8NFF5	587 aa		10.32	□□□□□ -0.76
SNHG1-223	ENST00000545440	ASAP1	Q9ULH1	1129 aa		10.32	□□□□□ -0.76
SNHG1-223	ENST00000545440	RCCD1	A6NED2	376 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	HMOX1	P09601	288 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	CABP4	P57796	275 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	AKAP4	Q5JQC9	854 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	CFAP53	Q96M91	514 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	GOPC	Q9HD26	462 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	ATG3	Q9NT62	314 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	TSKS	Q9UJT2	592 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	BRCA1	P38398	1863 aa	Known RBP	10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	KCP	Q6ZWJ8	1503 aa		10.31	□□□□□ -0.76
SNHG1-223	ENST00000545440	LAMB4	A4D0S4	1761 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	FAM205C	A6NFA0	338 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	POLD1	P28340	1107 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	ATP6V1A	P38606	617 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	COL23A1	Q86Y22	540 aa	Predicted RBP	10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	LINC00116	Q8NCU8	138 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	ARX	Q96QS3	562 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	PHOX2B	Q99453	314 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	BEGAIN	Q9BUH8	593 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	KIAA1551	Q9HCM1	1747 aa		10.3	□□□□□ -0.76
SNHG1-223	ENST00000545440	MS4A1	P11836	297 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	SSFA2	P28290	1259 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	PPP2R1A	P30153	589 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	ITPK1	Q13572	414 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	CNGB1	Q14028	1251 aa	Predicted RBP	10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	SYT17	Q9BSW7	474 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	KIAA1468	Q9P260	1216 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	RABGEF1	Q9UJ41	708 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	CNTNAP4	Q9C0A0	1308 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	KDM3B	Q7LBC6	1761 aa		10.29	□□□□□ -0.76
SNHG1-223	ENST00000545440	SCN7A	Q01118	1682 aa		10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	U2SURP	O15042	1029 aa	Known RBP	10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	MTHFSD	Q2M296	383 aa	Known RBP	10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	ZNF687	Q8N1G0	1237 aa		10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	MARVELD3	Q96A59	401 aa		10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	TMUB1	Q9BVT8	246 aa		10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	SLC4A5	Q9BY07	1137 aa		10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	NBPF3	Q9H094	633 aa		10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	AFDN	P55196	1824 aa	Known RBP	10.28	□□□□□ -0.76
SNHG1-223	ENST00000545440	BCOR	Q6W2J9	1755 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	N4BP2	Q86UW6	1770 aa	Predicted RBP	10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	PSEN2	P49810	448 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	PROX2	Q3B8N5	592 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	AMIGO3	Q86WK7	504 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	NUTM1	Q86Y26	1132 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	NFATC2IP	Q8NCF5	419 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	GAS2L2	Q8NHY3	880 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	SLC4A9	Q96Q91	983 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	ZBED2	Q9BTP6	218 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	SLC52A2	Q9HAB3	445 aa		10.27	□□□□□ -0.77
SNHG1-223	ENST00000545440	ARFGEF1	Q9Y6D6	1849 aa		10.26	□□□□□ -0.77
SNHG1-223	ENST00000545440	RNMT	O43148	476 aa	Known RBP	10.26	□□□□□ -0.77
SNHG1-223	ENST00000545440	REPIN1	Q9BWE0	567 aa	Known RBP	10.26	□□□□□ -0.77
SNHG1-223	ENST00000545440	NUDC	Q9Y266	331 aa		10.26	□□□□□ -0.77
SNHG1-223	ENST00000545440	DLEC1	Q9Y238	1755 aa		10.26	□□□□□ -0.77
SNHG1-223	ENST00000545440	CEMIP	Q8WUJ3	1361 aa		10.26	□□□□□ -0.77
SNHG1-223	ENST00000545440	UTRN	P46939	3433 aa		10.25	□□□□□ -0.77
SNHG1-223	ENST00000545440	NRXN2	Q9P2S2	1712 aa		10.25	□□□□□ -0.77
SNHG1-223	ENST00000545440	DDX11L8	A8MPP1	907 aa		10.25	□□□□□ -0.77
SNHG1-223	ENST00000545440	RC3H1	Q5TC82	1133 aa	Known RBP	10.25	□□□□□ -0.77
SNHG1-223	ENST00000545440	MSL1	Q68DK7	614 aa		10.25	□□□□□ -0.77
SNHG1-223	ENST00000545440	RDH13	Q8NBN7	331 aa		10.25	□□□□□ -0.77
SNHG1-223	ENST00000545440	NLRP7	Q8WX94	980 aa		10.25	□□□□□ -0.77
SNHG1-223	ENST00000545440	GNAT3	A8MTJ3	354 aa		10.24	□□□□□ -0.77
SNHG1-223	ENST00000545440	PRKAR2B	P31323	418 aa		10.24	□□□□□ -0.77
SNHG1-223	ENST00000545440	SH3D19	Q5HYK7	790 aa		10.24	□□□□□ -0.77
SNHG1-223	ENST00000545440	TMEM134	Q9H6X4	195 aa		10.24	□□□□□ -0.77
SNHG1-223	ENST00000545440	LGR6	Q9HBX8	967 aa		10.24	□□□□□ -0.77
SNHG1-223	ENST00000545440	FAM198A	Q9UFP1	575 aa		10.24	□□□□□ -0.77
SNHG1-223	ENST00000545440	RTCB	Q9Y3I0	505 aa	Known RBP	10.24	□□□□□ -0.77
SNHG1-223	ENST00000545440	PTCD1	O75127	700 aa	Known RBP	10.23	□□□□□ -0.77
SNHG1-223	ENST00000545440	U2AF1L5	P0DN76	240 aa	Predicted RBP	10.23	□□□□□ -0.77
SNHG1-223	ENST00000545440	U2AF1	Q01081	240 aa	Known RBP eCLIP	10.23	□□□□□ -0.77	6e-8	■■■□□ 17.5
SNHG1-223	ENST00000545440	NECTIN2	Q92692	538 aa		10.23	□□□□□ -0.77
SNHG1-223	ENST00000545440	SMAP	O00193	183 aa		10.22	□□□□□ -0.77
SNHG1-223	ENST00000545440	RPS6KA4	O75676	772 aa		10.22	□□□□□ -0.77
SNHG1-223	ENST00000545440	CRKL	P46109	303 aa	Known RBP	10.22	□□□□□ -0.77
SNHG1-223	ENST00000545440	SKIV2L	Q15477	1246 aa	Known RBP	10.22	□□□□□ -0.77
SNHG1-223	ENST00000545440	TRAPPC3L	Q5T215	181 aa		10.22	□□□□□ -0.77
SNHG1-223	ENST00000545440	CD2AP	Q9Y5K6	639 aa		10.22	□□□□□ -0.77
SNHG1-223	ENST00000545440	GOLGB1	Q14789	3259 aa	Known RBP	10.22	□□□□□ -0.77
SNHG1-223	ENST00000545440	TEF	Q10587	303 aa		10.21	□□□□□ -0.77
SNHG1-223	ENST00000545440	RALBP1	Q15311	655 aa		10.21	□□□□□ -0.77
SNHG1-223	ENST00000545440	SMIM5	Q71RC9	77 aa		10.21	□□□□□ -0.77
SNHG1-223	ENST00000545440	LAPTM4B	Q86VI4	370 aa		10.21	□□□□□ -0.77
SNHG1-223	ENST00000545440	IL17RE	Q8NFR9	667 aa		10.21	□□□□□ -0.77
SNHG1-223	ENST00000545440	PHACTR3	Q96KR7	559 aa		10.21	□□□□□ -0.77
SNHG1-223	ENST00000545440	C10orf71	Q711Q0	1435 aa		10.21	□□□□□ -0.78
SNHG1-223	ENST00000545440	GOLGA8CP	A6NN73	597 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	TK2	O00142	265 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	SLC39A6	Q13433	755 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	SLF2	Q8IX21	1173 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	TTC5	Q8N0Z6	440 aa		10.2	□□□□□ -0.78
SNHG1-223	ENST00000545440	ANKRD31	Q8N7Z5	1873 aa		10.2	□□□□□ -0.78

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