RNA–Protein interactions for RNA: ENST00000544506.1

LEMD3-205, Transcript of LEM domain containing 3, human

TSL 5

Gene LEMD3, Length 412 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LEMD3-205	ENST00000544506	GRN	P28799	593 aa	Known RBP	9.62	□□□□□ -0.87
LEMD3-205	ENST00000544506	SFSWAP	Q12872	951 aa	Known RBP	9.62	□□□□□ -0.87
LEMD3-205	ENST00000544506	ATCAY	Q86WG3	371 aa		9.62	□□□□□ -0.87
LEMD3-205	ENST00000544506	COL25A1	Q9BXS0	654 aa	Predicted RBP	9.62	□□□□□ -0.87
LEMD3-205	ENST00000544506	CD33	P20138	364 aa		9.61	□□□□□ -0.87
LEMD3-205	ENST00000544506	LAMC2	Q13753	1193 aa		9.61	□□□□□ -0.87
LEMD3-205	ENST00000544506	ECM1	Q16610	540 aa		9.61	□□□□□ -0.87
LEMD3-205	ENST00000544506	RNFT1	Q5M7Z0	435 aa		9.61	□□□□□ -0.87
LEMD3-205	ENST00000544506	USP20	Q9Y2K6	914 aa		9.61	□□□□□ -0.87
LEMD3-205	ENST00000544506	KCNQ4	P56696	695 aa		9.6	□□□□□ -0.87
LEMD3-205	ENST00000544506	TREML4	Q6UXN2	200 aa		9.6	□□□□□ -0.87
LEMD3-205	ENST00000544506	RGL4	Q8IZJ4	473 aa		9.6	□□□□□ -0.87
LEMD3-205	ENST00000544506	MARK1	Q9P0L2	795 aa		9.6	□□□□□ -0.87
LEMD3-205	ENST00000544506	KCNH4	Q9UQ05	1017 aa		9.6	□□□□□ -0.87
LEMD3-205	ENST00000544506	EPB42	P16452	691 aa		9.59	□□□□□ -0.87
LEMD3-205	ENST00000544506	CTBS	Q01459	385 aa		9.59	□□□□□ -0.87
LEMD3-205	ENST00000544506	KRT76	Q01546	638 aa		9.59	□□□□□ -0.87
LEMD3-205	ENST00000544506	GRIN2C	Q14957	1233 aa		9.59	□□□□□ -0.87
LEMD3-205	ENST00000544506	ALKBH2	Q6NS38	261 aa		9.59	□□□□□ -0.87
LEMD3-205	ENST00000544506	MX2	P20592	715 aa		9.58	□□□□□ -0.88
LEMD3-205	ENST00000544506	GMPR	P36959	345 aa		9.58	□□□□□ -0.88
LEMD3-205	ENST00000544506	ARHGAP4	P98171	946 aa		9.58	□□□□□ -0.88
LEMD3-205	ENST00000544506	GPR152	Q8TDT2	470 aa		9.58	□□□□□ -0.88
LEMD3-205	ENST00000544506	MBIP	Q9NS73	344 aa		9.58	□□□□□ -0.88
LEMD3-205	ENST00000544506	BIN2	Q9UBW5	565 aa	Predicted RBP	9.58	□□□□□ -0.88
LEMD3-205	ENST00000544506	RTCB	Q9Y3I0	505 aa	Known RBP	9.58	□□□□□ -0.88
LEMD3-205	ENST00000544506	ZBTB7C	A1YPR0	619 aa		9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	AAMP	Q13685	434 aa		9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	FAM182B	Q5T319	152 aa		9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	LCE2A	Q5TA79	106 aa	Predicted RBP	9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	CMTR1	Q8N1G2	835 aa	Known RBP	9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	EDEM1	Q92611	657 aa		9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	CNTNAP3B	Q96NU0	1288 aa		9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	CNTNAP3	Q9BZ76	1288 aa		9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	FAM13B	Q9NYF5	915 aa		9.57	□□□□□ -0.88
LEMD3-205	ENST00000544506	C2CD2L	O14523	706 aa		9.56	□□□□□ -0.88
LEMD3-205	ENST00000544506	FZD6	O60353	706 aa		9.56	□□□□□ -0.88
LEMD3-205	ENST00000544506	DNM1	Q05193	864 aa	Known RBP	9.56	□□□□□ -0.88
LEMD3-205	ENST00000544506	KCNMB2	Q9Y691	235 aa		9.56	□□□□□ -0.88
LEMD3-205	ENST00000544506	PDGFA	P04085	211 aa		9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	BMP4	P12644	408 aa		9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	SPEM2	Q0P670	501 aa		9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	TRIP4	Q15650	581 aa	Predicted RBP	9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	PIK3R5	Q8WYR1	880 aa		9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	NUDT16	Q96DE0	195 aa	Known RBP	9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	SLC30A3	Q99726	388 aa		9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	GZF1	Q9H116	711 aa	Predicted RBP	9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	CCDC87	Q9NVE4	849 aa		9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	POLI	Q9UNA4	740 aa		9.55	□□□□□ -0.88
LEMD3-205	ENST00000544506	MZF1	P28698	734 aa	Predicted RBP	9.54	□□□□□ -0.88
LEMD3-205	ENST00000544506	TRIM26	Q12899	539 aa	Predicted RBP	9.54	□□□□□ -0.88
LEMD3-205	ENST00000544506	SND1	Q7KZF4	910 aa	Known RBP eCLIP	9.54	□□□□□ -0.88
LEMD3-205	ENST00000544506	RAB44	Q7Z6P3	723 aa	Predicted RBP	9.54	□□□□□ -0.88
LEMD3-205	ENST00000544506	IGF1R	P08069	1367 aa		9.53	□□□□□ -0.88
LEMD3-205	ENST00000544506	NSFL1C	Q9UNZ2	370 aa	Known RBP	9.53	□□□□□ -0.88
LEMD3-205	ENST00000544506	XYLB	O75191	536 aa		9.52	□□□□□ -0.89
LEMD3-205	ENST00000544506	MAP2K3	P46734	347 aa		9.52	□□□□□ -0.89
LEMD3-205	ENST00000544506	SRSF11	Q05519	484 aa	Known RBP	9.52	□□□□□ -0.89
LEMD3-205	ENST00000544506	CCIN	Q13939	588 aa		9.52	□□□□□ -0.89
LEMD3-205	ENST00000544506	GSX2	Q9BZM3	304 aa		9.52	□□□□□ -0.89
LEMD3-205	ENST00000544506	C11orf16	Q9NQ32	467 aa		9.52	□□□□□ -0.89
LEMD3-205	ENST00000544506	BRPF3	Q9ULD4	1205 aa		9.52	□□□□□ -0.89
LEMD3-205	ENST00000544506	NDUFB5	O43674	189 aa		9.51	□□□□□ -0.89
LEMD3-205	ENST00000544506	EGFR	P00533	1210 aa		9.51	□□□□□ -0.89
LEMD3-205	ENST00000544506	PRR12	Q9ULL5	1215 aa		9.51	□□□□□ -0.89
LEMD3-205	ENST00000544506	UBAP1L	F5GYI3	381 aa		9.5	□□□□□ -0.89
LEMD3-205	ENST00000544506	ADAMTS2	O95450	1211 aa		9.5	□□□□□ -0.89
LEMD3-205	ENST00000544506	PCSK2	P16519	638 aa		9.5	□□□□□ -0.89
LEMD3-205	ENST00000544506	ZNF468	Q5VIY5	522 aa	Predicted RBP	9.5	□□□□□ -0.89
LEMD3-205	ENST00000544506	KRT25	Q7Z3Z0	450 aa		9.5	□□□□□ -0.89
LEMD3-205	ENST00000544506	BHMT	Q93088	406 aa		9.5	□□□□□ -0.89
LEMD3-205	ENST00000544506	GGNBP2	Q9H3C7	697 aa		9.5	□□□□□ -0.89
LEMD3-205	ENST00000544506		A6NHS1	94 aa		9.49	□□□□□ -0.89
LEMD3-205	ENST00000544506	NFKB1	P19838	968 aa		9.49	□□□□□ -0.89
LEMD3-205	ENST00000544506	GJD3	Q8N144	294 aa		9.49	□□□□□ -0.89
LEMD3-205	ENST00000544506	PNMA5	Q96PV4	448 aa		9.49	□□□□□ -0.89
LEMD3-205	ENST00000544506	DCTN4	Q9UJW0	460 aa		9.49	□□□□□ -0.89
LEMD3-205	ENST00000544506	FNDC3A	Q9Y2H6	1198 aa	Known RBP	9.49	□□□□□ -0.89
LEMD3-205	ENST00000544506	SASH3	O75995	380 aa		9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	RPLP1	P05386	114 aa	Known RBP	9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	ARAF	P10398	606 aa		9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	TARS	P26639	723 aa	Known RBP	9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	USP5	P45974	858 aa		9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	PCBP4	P57723	403 aa	Known RBP	9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	NEUROD1	Q13562	356 aa		9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	C8orf34	Q49A92	452 aa		9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	SYT9	Q86SS6	491 aa		9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	AVEN	Q9NQS1	362 aa	Predicted RBP	9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	ZFAT	Q9P243	1243 aa		9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	9.48	□□□□□ -0.89
LEMD3-205	ENST00000544506	SLURP2	P0DP57	97 aa		9.47	□□□□□ -0.89
LEMD3-205	ENST00000544506	MAPK1	P28482	360 aa		9.47	□□□□□ -0.89
LEMD3-205	ENST00000544506	OXCT2	Q9BYC2	517 aa	Predicted RBP	9.47	□□□□□ -0.89
LEMD3-205	ENST00000544506	EFCC1	Q9HA90	598 aa		9.47	□□□□□ -0.89
LEMD3-205	ENST00000544506	KLF15	Q9UIH9	416 aa		9.47	□□□□□ -0.89
LEMD3-205	ENST00000544506	WIPF1	O43516	503 aa		9.46	□□□□□ -0.9
LEMD3-205	ENST00000544506	RARA	P10276	462 aa		9.46	□□□□□ -0.9
LEMD3-205	ENST00000544506	NLRP13	Q86W25	1043 aa		9.46	□□□□□ -0.9
LEMD3-205	ENST00000544506	TTC16	Q8NEE8	873 aa		9.46	□□□□□ -0.9
LEMD3-205	ENST00000544506	ACD	Q96AP0	544 aa		9.46	□□□□□ -0.9

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