RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 SASH1O94885 1247 aa11.92□□□□□ -0.5
SS18-205ENST00000542420 MYD88Q99836 296 aa11.92□□□□□ -0.5
SS18-205ENST00000542420 RRAGDQ9NQL2 400 aaPredicted RBP11.92□□□□□ -0.5
SS18-205ENST00000542420 ATG3Q9NT62 314 aa11.92□□□□□ -0.5
SS18-205ENST00000542420 RFX5P48382 616 aaPredicted RBP11.91□□□□□ -0.5
SS18-205ENST00000542420 CASP7P55210 303 aa11.91□□□□□ -0.5
SS18-205ENST00000542420 TOM1L2Q6ZVM7 507 aa11.91□□□□□ -0.5
SS18-205ENST00000542420 AACSQ86V21 672 aa11.91□□□□□ -0.5
SS18-205ENST00000542420 FBXO3Q9UK99 471 aa11.91□□□□□ -0.5
SS18-205ENST00000542420 USP16Q9Y5T5 823 aa11.91□□□□□ -0.5
SS18-205ENST00000542420 H7C1W4 665 aa11.91□□□□□ -0.5
SS18-205ENST00000542420 AIMP1Q12904 312 aaKnown RBP11.91□□□□□ -0.5
SS18-205ENST00000542420 TTC14Q96N46 770 aa11.91□□□□□ -0.5
SS18-205ENST00000542420 ALDH8A1Q9H2A2 487 aaPredicted RBP11.91□□□□□ -0.5
SS18-205ENST00000542420 DISP2A7MBM2 1401 aa11.9□□□□□ -0.5
SS18-205ENST00000542420 BRD1O95696 1058 aa11.9□□□□□ -0.5
SS18-205ENST00000542420 ZSCAN31Q96LW9 406 aaPredicted RBP11.9□□□□□ -0.5
SS18-205ENST00000542420 PALD1Q9ULE6 856 aa11.9□□□□□ -0.5
SS18-205ENST00000542420 SNX14Q9Y5W7 946 aa11.9□□□□□ -0.5
SS18-205ENST00000542420 MYH3P11055 1940 aa11.9□□□□□ -0.5
SS18-205ENST00000542420 ATP5JP18859 108 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 HSPA2P54652 639 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 CCDC191Q8NCU4 936 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 MED23Q9ULK4 1368 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 MYL6BP14649 208 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 TRIM28Q13263 835 aaKnown RBP11.89□□□□□ -0.51
SS18-205ENST00000542420 VPS53Q5VIR6 699 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 EAF2Q96CJ1 260 aaPredicted RBP11.89□□□□□ -0.51
SS18-205ENST00000542420 HMG20BQ9P0W2 317 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 CCDC171Q6TFL3 1326 aa11.89□□□□□ -0.51
SS18-205ENST00000542420 TSGA10IPQ3SY00 556 aa11.88□□□□□ -0.51
SS18-205ENST00000542420 SH2B1Q9NRF2 756 aaPredicted RBP11.88□□□□□ -0.51
SS18-205ENST00000542420 PA2G4Q9UQ80 394 aaKnown RBP11.88□□□□□ -0.51
SS18-205ENST00000542420 ZBTB22O15209 634 aa11.88□□□□□ -0.51
SS18-205ENST00000542420 MBD3O95983 291 aa11.88□□□□□ -0.51
SS18-205ENST00000542420 ZNF445P59923 1031 aa11.88□□□□□ -0.51
SS18-205ENST00000542420 PTPN12Q05209 780 aaKnown RBP11.88□□□□□ -0.51
SS18-205ENST00000542420 CWC25Q9NXE8 425 aaPredicted RBP11.88□□□□□ -0.51
SS18-205ENST00000542420 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.88□□□□□ -0.51
SS18-205ENST00000542420 WDR33Q9C0J8 1336 aaKnown RBP11.87□□□□□ -0.51
SS18-205ENST00000542420 CIAO1O76071 339 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 PSMA5P28066 241 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 NECTIN1Q15223 517 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 RNF20Q5VTR2 975 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.87□□□□□ -0.51
SS18-205ENST00000542420 MAP4K1Q92918 833 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 ZSWIM6Q9HCJ5 1215 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 LMBRD1Q9NUN5 540 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 LIMCH1Q9UPQ0 1083 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 COL16A1Q07092 1604 aaPredicted RBP11.87□□□□□ -0.51
SS18-205ENST00000542420 RPAP1Q9BWH6 1393 aaPredicted RBP11.87□□□□□ -0.51
SS18-205ENST00000542420 RREB1Q92766 1687 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 ZKSCAN1P17029 563 aaPredicted RBP11.87□□□□□ -0.51
SS18-205ENST00000542420 TNNI3KQ59H18 835 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 FOXD4L1Q9NU39 408 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 FPGT-TNNI3KV9GXZ4 949 aa11.87□□□□□ -0.51
SS18-205ENST00000542420 PALLDQ8WX93 1383 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 ABCC12Q96J65 1359 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 ZNF335Q9H4Z2 1342 aaPredicted RBP11.86□□□□□ -0.51
SS18-205ENST00000542420 A0A087WZG4 1122 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 NBPF26B4DH59 902 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 RRP9O43818 475 aaKnown RBP11.86□□□□□ -0.51
SS18-205ENST00000542420 NBPF14Q5TI25 921 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 NBPF10Q6P3W6 841 aaKnown RBP11.86□□□□□ -0.51
SS18-205ENST00000542420 CWC27Q6UX04 472 aaKnown RBP11.86□□□□□ -0.51
SS18-205ENST00000542420 ZGPATQ8N5A5 531 aaKnown RBP11.86□□□□□ -0.51
SS18-205ENST00000542420 NBPF15Q8N660 670 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 PLA2G12BQ9BX93 195 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 IL25Q9H293 177 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 ZDHHC9Q9Y397 364 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.86□□□□□ -0.51
SS18-205ENST00000542420 MYH7P12883 1935 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 ANKRD1Q15327 319 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 EPHA10Q5JZY3 1008 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 GRPEL1Q9HAV7 217 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 NRAPQ86VF7 1730 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 ZNF831Q5JPB2 1677 aa11.86□□□□□ -0.51
SS18-205ENST00000542420 NWD2Q9ULI1 1742 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 ROBO1Q9Y6N7 1651 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 XRCC6P12956 609 aaKnown RBP eCLIP11.85□□□□□ -0.51
SS18-205ENST00000542420 IL15P40933 162 aaPredicted RBP11.85□□□□□ -0.51
SS18-205ENST00000542420 FOXO4P98177 505 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 KRT32Q14532 448 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 USPL1Q5W0Q7 1092 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 TMEM87AQ8NBN3 555 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 ISCA1Q9BUE6 129 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 DDX49Q9Y6V7 483 aaKnown RBP11.85□□□□□ -0.51
SS18-205ENST00000542420 KDM4FA0A1W2PPD8 638 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 UBE3BQ7Z3V4 1068 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 CYP46A1Q9Y6A2 500 aa11.85□□□□□ -0.51
SS18-205ENST00000542420 ZNF609O15014 1411 aa11.84□□□□□ -0.51
SS18-205ENST00000542420 EVA1CP58658 441 aa11.84□□□□□ -0.51
SS18-205ENST00000542420 HAUS7Q99871 368 aa11.84□□□□□ -0.51
SS18-205ENST00000542420 CDCA7Q9BWT1 371 aaPredicted RBP11.84□□□□□ -0.51
SS18-205ENST00000542420 ATP6V1DQ9Y5K8 247 aa11.84□□□□□ -0.51
SS18-205ENST00000542420 NUP98P52948 1817 aa11.84□□□□□ -0.51
SS18-205ENST00000542420 SH3TC1Q8TE82 1336 aa11.84□□□□□ -0.51
SS18-205ENST00000542420 MAP4K4O95819 1239 aaPredicted RBP11.83□□□□□ -0.51
SS18-205ENST00000542420 MCTP1Q6DN14 999 aa11.83□□□□□ -0.51
SS18-205ENST00000542420 RUFY3Q7L099 469 aa11.83□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 180.5 ms