RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 RNF123Q5XPI4 1314 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 PRKAR2BP31323 418 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 MAP1SQ66K74 1059 aaPredicted RBP10.74□□□□□ -0.69
NEDD8-207ENST00000533242 PHACTR3Q96KR7 559 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 RSPH6AQ9H0K4 717 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 SALL2Q9Y467 1007 aaPredicted RBP10.74□□□□□ -0.69
NEDD8-207ENST00000533242 PRAMEF22A3QJZ6 481 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 NBPF26B4DH59 902 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 ERICH6BQ5W0A0 696 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 CC2D2BQ6DHV5 1058 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 NBPF10Q6P3W6 841 aaKnown RBP10.74□□□□□ -0.69
NEDD8-207ENST00000533242 OLFM4Q6UX06 510 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 NBPF15Q8N660 670 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 ABHD8Q96I13 439 aa10.74□□□□□ -0.69
NEDD8-207ENST00000533242 JDP2Q8WYK2 163 aa10.73□□□□□ -0.69
NEDD8-207ENST00000533242 ABT1Q9ULW3 272 aaKnown RBP10.73□□□□□ -0.69
NEDD8-207ENST00000533242 RIC1Q4ADV7 1423 aa10.73□□□□□ -0.69
NEDD8-207ENST00000533242 KDM3BQ7LBC6 1761 aa10.73□□□□□ -0.69
NEDD8-207ENST00000533242 COL4A5P29400 1685 aa10.73□□□□□ -0.69
NEDD8-207ENST00000533242 SLC34A2O95436 690 aa10.73□□□□□ -0.69
NEDD8-207ENST00000533242 EIF6P56537 245 aaKnown RBP10.73□□□□□ -0.69
NEDD8-207ENST00000533242 GRIPAP1Q4V328 841 aa10.73□□□□□ -0.69
NEDD8-207ENST00000533242 CFAP53Q96M91 514 aa10.73□□□□□ -0.69
NEDD8-207ENST00000533242 LMOD1P29536 600 aaPredicted RBP10.72□□□□□ -0.69
NEDD8-207ENST00000533242 CRY2Q49AN0 593 aa10.72□□□□□ -0.69
NEDD8-207ENST00000533242 RTF1Q92541 710 aaKnown RBP10.72□□□□□ -0.69
NEDD8-207ENST00000533242 NYXQ9GZU5 481 aa10.72□□□□□ -0.69
NEDD8-207ENST00000533242 DDX21Q9NR30 783 aaKnown RBP eCLIP10.72□□□□□ -0.69
NEDD8-207ENST00000533242 FAM177BA6PVY3 158 aa10.72□□□□□ -0.69
NEDD8-207ENST00000533242 HTATSF1O43719 755 aaKnown RBP10.72□□□□□ -0.69
NEDD8-207ENST00000533242 GTF2E1P29083 439 aaPredicted RBP10.72□□□□□ -0.69
NEDD8-207ENST00000533242 ECE1P42892 770 aa10.72□□□□□ -0.69
NEDD8-207ENST00000533242 DLG5Q8TDM6 1919 aa10.71□□□□□ -0.69
NEDD8-207ENST00000533242 IBTKQ9P2D0 1353 aaPredicted RBP10.71□□□□□ -0.69
NEDD8-207ENST00000533242 HLFQ16534 295 aa10.71□□□□□ -0.69
NEDD8-207ENST00000533242 ABCC12Q96J65 1359 aa10.71□□□□□ -0.7
NEDD8-207ENST00000533242 MCM10Q7L590 875 aa10.7□□□□□ -0.7
NEDD8-207ENST00000533242 CAPNS2Q96L46 248 aa10.7□□□□□ -0.7
NEDD8-207ENST00000533242 GJA3Q9Y6H8 435 aa10.7□□□□□ -0.7
NEDD8-207ENST00000533242 ERVV-1B6SEH8 477 aa10.7□□□□□ -0.7
NEDD8-207ENST00000533242 HOXA10P31260 410 aaPredicted RBP10.7□□□□□ -0.7
NEDD8-207ENST00000533242 USP50Q70EL3 339 aaPredicted RBP10.69□□□□□ -0.7
NEDD8-207ENST00000533242 RPGRQ92834 1020 aaKnown RBP10.69□□□□□ -0.7
NEDD8-207ENST00000533242 CDCA7LQ96GN5 454 aa10.69□□□□□ -0.7
NEDD8-207ENST00000533242 SCNN1DP51172 638 aa10.69□□□□□ -0.7
NEDD8-207ENST00000533242 TAF7Q15545 349 aaPredicted RBP10.69□□□□□ -0.7
NEDD8-207ENST00000533242 FAM161AQ3B820 660 aa10.69□□□□□ -0.7
NEDD8-207ENST00000533242 CRAMP1Q96RY5 1269 aa10.69□□□□□ -0.7
NEDD8-207ENST00000533242 BEGAINQ9BUH8 593 aa10.69□□□□□ -0.7
NEDD8-207ENST00000533242 MAP3K15Q6ZN16 1313 aa10.69□□□□□ -0.7
NEDD8-207ENST00000533242 EPS15P42566 896 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 NUTM1Q86Y26 1132 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 LARGE2Q8N3Y3 721 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 RBM17Q96I25 401 aaKnown RBP10.68□□□□□ -0.7
NEDD8-207ENST00000533242 TLL2Q9Y6L7 1015 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 U2AF1L5P0DN76 240 aaPredicted RBP10.68□□□□□ -0.7
NEDD8-207ENST00000533242 RGS19P49795 217 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 U2AF1Q01081 240 aaKnown RBP eCLIP10.68□□□□□ -0.7
NEDD8-207ENST00000533242 PAXIP1Q6ZW49 1069 aaPredicted RBP10.68□□□□□ -0.7
NEDD8-207ENST00000533242 NIM1KQ8IY84 436 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 VPS33BQ9H267 617 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 LAMB2P55268 1798 aa10.68□□□□□ -0.7
NEDD8-207ENST00000533242 PPEF1O14829 653 aaPredicted RBP10.67□□□□□ -0.7
NEDD8-207ENST00000533242 MAP2K2P36507 400 aa10.67□□□□□ -0.7
NEDD8-207ENST00000533242 DCTN1Q14203 1278 aa10.67□□□□□ -0.7
NEDD8-207ENST00000533242 CST9Q5W186 159 aa10.67□□□□□ -0.7
NEDD8-207ENST00000533242 CYP4F22Q6NT55 531 aa10.67□□□□□ -0.7
NEDD8-207ENST00000533242 KIF6Q6ZMV9 814 aa10.67□□□□□ -0.7
NEDD8-207ENST00000533242 GPR101Q96P66 508 aaPredicted RBP10.67□□□□□ -0.7
NEDD8-207ENST00000533242 ANKRD36CQ5JPF3 1778 aa10.67□□□□□ -0.7
NEDD8-207ENST00000533242 FMR1Q06787 632 aaKnown RBP eCLIP10.67□□□□□ -0.7
NEDD8-207ENST00000533242 ANP32EQ9BTT0 268 aa10.67□□□□□ -0.7
NEDD8-207ENST00000533242 CCDC85CA6NKD9 419 aa10.66□□□□□ -0.7
NEDD8-207ENST00000533242 MLLT1Q03111 559 aaPredicted RBP10.66□□□□□ -0.7
NEDD8-207ENST00000533242 ADARB2Q9NS39 739 aaKnown RBP10.66□□□□□ -0.7
NEDD8-207ENST00000533242 TRAF5O00463 557 aa10.66□□□□□ -0.7
NEDD8-207ENST00000533242 CA12O43570 354 aa10.66□□□□□ -0.7
NEDD8-207ENST00000533242 SUSD4Q5VX71 490 aa10.66□□□□□ -0.7
NEDD8-207ENST00000533242 ZNF34Q8IZ26 560 aa10.66□□□□□ -0.7
NEDD8-207ENST00000533242 NGEFQ8N5V2 710 aa10.66□□□□□ -0.7
NEDD8-207ENST00000533242 GPRC5DQ9NZD1 345 aa10.66□□□□□ -0.7
NEDD8-207ENST00000533242 UBN2Q6ZU65 1347 aa10.65□□□□□ -0.7
NEDD8-207ENST00000533242 PPIP5K2O43314 1243 aa10.65□□□□□ -0.7
NEDD8-207ENST00000533242 TTLL7Q6ZT98 887 aa10.65□□□□□ -0.7
NEDD8-207ENST00000533242 SUPT20HQ8NEM7 779 aa10.65□□□□□ -0.7
NEDD8-207ENST00000533242 HHIPL1Q96JK4 782 aa10.65□□□□□ -0.7
NEDD8-207ENST00000533242 NTSR2O95665 410 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 GPTP24298 496 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 PPP2R1AP30153 589 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 GRM1Q13255 1194 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 TMX4Q9H1E5 349 aaPredicted RBP10.64□□□□□ -0.71
NEDD8-207ENST00000533242 MIS18AQ9NYP9 233 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 ERBB4Q15303 1308 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 AOC2O75106 756 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 PPP1R42Q7Z4L9 355 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 PIAS4Q8N2W9 510 aaPredicted RBP10.64□□□□□ -0.71
NEDD8-207ENST00000533242 PGAP2Q9UHJ9 254 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 ZNRF3Q9ULT6 936 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 ADAMTS8Q9UP79 889 aa10.64□□□□□ -0.71
NEDD8-207ENST00000533242 RRP7AQ9Y3A4 280 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 132.6 ms