RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 ME3Q16798 604 aa23.05■■□□□ 1.28
VPS28-213ENST00000530983 UVSSAQ2YD98 709 aa23.05■■□□□ 1.28
VPS28-213ENST00000530983 TPRNQ4KMQ1 711 aa23.05■■□□□ 1.28
VPS28-213ENST00000530983 CREB3L3Q68CJ9 461 aa23.05■■□□□ 1.28
VPS28-213ENST00000530983 DDX54Q8TDD1 881 aaKnown RBP23.05■■□□□ 1.28
VPS28-213ENST00000530983 MAP4K1Q92918 833 aa23.05■■□□□ 1.28
VPS28-213ENST00000530983 TLR7Q9NYK1 1049 aaKnown RBP23.05■■□□□ 1.28
VPS28-213ENST00000530983 RGPD5Q99666 1765 aa23.05■■□□□ 1.28
VPS28-213ENST00000530983 ZKSCAN1P17029 563 aaPredicted RBP23.05■■□□□ 1.28
VPS28-213ENST00000530983 AIMP1Q12904 312 aaKnown RBP23.05■■□□□ 1.28
VPS28-213ENST00000530983 CCDC8Q9H0W5 538 aaPredicted RBP23.05■■□□□ 1.28
VPS28-213ENST00000530983 LMTK3Q96Q04 1460 aa23.05■■□□□ 1.28
VPS28-213ENST00000530983 LETM1O95202 739 aaPredicted RBP23.04■■□□□ 1.28
VPS28-213ENST00000530983 DDX58O95786 925 aaKnown RBP23.04■■□□□ 1.28
VPS28-213ENST00000530983 DNM1Q05193 864 aaKnown RBP23.04■■□□□ 1.28
VPS28-213ENST00000530983 G3BP1Q13283 466 aaKnown RBP eCLIP23.04■■□□□ 1.28
VPS28-213ENST00000530983 SNRKQ9NRH2 765 aa23.04■■□□□ 1.28
VPS28-213ENST00000530983 C5P01031 1676 aa23.04■■□□□ 1.28
VPS28-213ENST00000530983 IGKV5-2P06315 115 aa23.04■■□□□ 1.28
VPS28-213ENST00000530983 HIP1O00291 1037 aa23.03■■□□□ 1.28
VPS28-213ENST00000530983 PTMAP06454 111 aaKnown RBP23.03■■□□□ 1.28
VPS28-213ENST00000530983 COL9A3Q14050 684 aaPredicted RBP23.03■■□□□ 1.28
VPS28-213ENST00000530983 CSPP1Q1MSJ5 1256 aa23.03■■□□□ 1.28
VPS28-213ENST00000530983 TRPM3Q9HCF6 1732 aaPredicted RBP23.03■■□□□ 1.28
VPS28-213ENST00000530983 TPCN1Q9ULQ1 816 aa23.03■■□□□ 1.28
VPS28-213ENST00000530983 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.03■■□□□ 1.28
VPS28-213ENST00000530983 HCLS1P14317 486 aaPredicted RBP23.02■■□□□ 1.28
VPS28-213ENST00000530983 NECAB1Q8N987 351 aa23.02■■□□□ 1.28
VPS28-213ENST00000530983 USP25Q9UHP3 1055 aa23.02■■□□□ 1.28
VPS28-213ENST00000530983 A0A0D9SFI3 127 aa23.02■■□□□ 1.28
VPS28-213ENST00000530983 LMOD2Q6P5Q4 547 aa23.02■■□□□ 1.28
VPS28-213ENST00000530983 SIL1Q9H173 461 aa23.02■■□□□ 1.28
VPS28-213ENST00000530983 SLC27A2O14975 620 aa23.01■■□□□ 1.27
VPS28-213ENST00000530983 KCNJ4P48050 445 aa23.01■■□□□ 1.27
VPS28-213ENST00000530983 MRC1P22897 1456 aa23.01■■□□□ 1.27
VPS28-213ENST00000530983 NPHP4O75161 1426 aaPredicted RBP23.01■■□□□ 1.27
VPS28-213ENST00000530983 KLHDC4Q8TBB5 520 aa23■■□□□ 1.27
VPS28-213ENST00000530983 FUCA2Q9BTY2 467 aa23■■□□□ 1.27
VPS28-213ENST00000530983 BOLA2Q9H3K6 86 aa23■■□□□ 1.27
VPS28-213ENST00000530983 MED23Q9ULK4 1368 aa23■■□□□ 1.27
VPS28-213ENST00000530983 VPS37CA5D8V6 355 aaPredicted RBP23■■□□□ 1.27
VPS28-213ENST00000530983 SCN11AQ9UI33 1791 aa23■■□□□ 1.27
VPS28-213ENST00000530983 SLC39A6Q13433 755 aa22.99■■□□□ 1.27
VPS28-213ENST00000530983 RIC3Q7Z5B4 369 aa22.99■■□□□ 1.27
VPS28-213ENST00000530983 FSD1Q9BTV5 496 aa22.99■■□□□ 1.27
VPS28-213ENST00000530983 ZNF790Q6PG37 636 aa22.98■■□□□ 1.27
VPS28-213ENST00000530983 NEURL1BA8MQ27 555 aa22.98■■□□□ 1.27
VPS28-213ENST00000530983 PSMA5P28066 241 aa22.98■■□□□ 1.27
VPS28-213ENST00000530983 GIMAP6Q6P9H5 292 aa22.98■■□□□ 1.27
VPS28-213ENST00000530983 LARP1Q6PKG0 1096 aaKnown RBP22.98■■□□□ 1.27
VPS28-213ENST00000530983 FAM13BQ9NYF5 915 aa22.98■■□□□ 1.27
VPS28-213ENST00000530983 TAF6LQ9Y6J9 622 aa22.98■■□□□ 1.27
VPS28-213ENST00000530983 ERBB3P21860 1342 aa22.98■■□□□ 1.27
VPS28-213ENST00000530983 JCADQ9P266 1359 aa22.97■■□□□ 1.27
VPS28-213ENST00000530983 ADCY5O95622 1261 aa22.97■■□□□ 1.27
VPS28-213ENST00000530983 KIAA2012Q0VF49 1180 aa22.97■■□□□ 1.27
VPS28-213ENST00000530983 KDM6AO15550 1401 aaPredicted RBP22.97■■□□□ 1.27
VPS28-213ENST00000530983 GCKRQ14397 625 aa22.97■■□□□ 1.27
VPS28-213ENST00000530983 EPHA10Q5JZY3 1008 aa22.97■■□□□ 1.27
VPS28-213ENST00000530983 KLHL34Q8N239 644 aa22.97■■□□□ 1.27
VPS28-213ENST00000530983 ADAMTSL3P82987 1691 aa22.96■■□□□ 1.27
VPS28-213ENST00000530983 MYL6BP14649 208 aa22.96■■□□□ 1.27
VPS28-213ENST00000530983 LARP1BQ659C4 914 aaKnown RBP22.96■■□□□ 1.27
VPS28-213ENST00000530983 ZNF589Q86UQ0 364 aaPredicted RBP22.96■■□□□ 1.27
VPS28-213ENST00000530983 MPNDQ8N594 471 aa22.96■■□□□ 1.27
VPS28-213ENST00000530983 TCEANC2Q96MN5 208 aa22.96■■□□□ 1.27
VPS28-213ENST00000530983 NEXNQ0ZGT2 675 aa22.95■■□□□ 1.26
VPS28-213ENST00000530983 RNF20Q5VTR2 975 aa22.95■■□□□ 1.26
VPS28-213ENST00000530983 BLOC1S2Q6QNY1 142 aa22.95■■□□□ 1.26
VPS28-213ENST00000530983 CDC37L1Q7L3B6 337 aa22.95■■□□□ 1.26
VPS28-213ENST00000530983 XAGE3Q8WTP9 111 aa22.95■■□□□ 1.26
VPS28-213ENST00000530983 SLC52A2Q9HAB3 445 aa22.95■■□□□ 1.26
VPS28-213ENST00000530983 UQCRHLA0A096LP55 91 aa22.94■■□□□ 1.26
VPS28-213ENST00000530983 UQCRHP07919 91 aa22.94■■□□□ 1.26
VPS28-213ENST00000530983 KDM4AO75164 1064 aa22.94■■□□□ 1.26
VPS28-213ENST00000530983 RPS6KB1P23443 525 aa22.94■■□□□ 1.26
VPS28-213ENST00000530983 TOB2Q14106 344 aaPredicted RBP22.93■■□□□ 1.26
VPS28-213ENST00000530983 COPS6Q7L5N1 327 aa22.93■■□□□ 1.26
VPS28-213ENST00000530983 NPHP3Q7Z494 1330 aa22.93■■□□□ 1.26
VPS28-213ENST00000530983 TTC6Q86TZ1 520 aa22.93■■□□□ 1.26
VPS28-213ENST00000530983 ZNF830Q96NB3 372 aaPredicted RBP22.93■■□□□ 1.26
VPS28-213ENST00000530983 MYD88Q99836 296 aa22.93■■□□□ 1.26
VPS28-213ENST00000530983 METTL22Q9BUU2 404 aaPredicted RBP22.93■■□□□ 1.26
VPS28-213ENST00000530983 ALDH8A1Q9H2A2 487 aaPredicted RBP22.93■■□□□ 1.26
VPS28-213ENST00000530983 ANKRD1Q15327 319 aa22.93■■□□□ 1.26
VPS28-213ENST00000530983 KRT28Q7Z3Y7 464 aa22.93■■□□□ 1.26
VPS28-213ENST00000530983 EDC3Q96F86 508 aaKnown RBP22.93■■□□□ 1.26
VPS28-213ENST00000530983 MAP7D2Q96T17 732 aa22.93■■□□□ 1.26
VPS28-213ENST00000530983 FERMT3Q86UX7 667 aa22.92■■□□□ 1.26
VPS28-213ENST00000530983 PDIA4P13667 645 aaKnown RBP22.92■■□□□ 1.26
VPS28-213ENST00000530983 TSGA10IPQ3SY00 556 aa22.92■■□□□ 1.26
VPS28-213ENST00000530983 SASS6Q6UVJ0 657 aa22.92■■□□□ 1.26
VPS28-213ENST00000530983 NFATC2IPQ8NCF5 419 aa22.92■■□□□ 1.26
VPS28-213ENST00000530983 TAF5LO75529 589 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 KRT85P78386 507 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 LRP10Q7Z4F1 713 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 HMG20BQ9P0W2 317 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 AFDNP55196 1824 aaKnown RBP22.91■■□□□ 1.26
VPS28-213ENST00000530983 COL15A1P39059 1388 aa22.91■■□□□ 1.26
VPS28-213ENST00000530983 PDCP20941 246 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms