RNA–Protein interactions for RNA: ENST00000528216.5

PGAP2-231, Transcript of post-GPI attachment to proteins 2, human

TSL 1 (best)

Gene PGAP2, Length 1,815 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PGAP2-231	ENST00000528216	COPS6	Q7L5N1	327 aa		12.37	□□□□□ -0.43
PGAP2-231	ENST00000528216	COPRS	Q9NQ92	184 aa		12.37	□□□□□ -0.43
PGAP2-231	ENST00000528216	PRAMEF22	A3QJZ6	481 aa		12.37	□□□□□ -0.43
PGAP2-231	ENST00000528216	NEK4	P51957	841 aa		12.37	□□□□□ -0.43
PGAP2-231	ENST00000528216	SLC39A6	Q13433	755 aa		12.37	□□□□□ -0.43
PGAP2-231	ENST00000528216	BICC1	Q9H694	974 aa	Known RBP	12.37	□□□□□ -0.43
PGAP2-231	ENST00000528216	DIAPH3	Q9NSV4	1193 aa		12.37	□□□□□ -0.43
PGAP2-231	ENST00000528216	TNS2	Q63HR2	1409 aa		12.36	□□□□□ -0.43
PGAP2-231	ENST00000528216	NRAP	Q86VF7	1730 aa		12.36	□□□□□ -0.43
PGAP2-231	ENST00000528216	AIMP1	Q12904	312 aa	Known RBP	12.36	□□□□□ -0.43
PGAP2-231	ENST00000528216	RABL6	Q3YEC7	729 aa	Predicted RBP	12.36	□□□□□ -0.43
PGAP2-231	ENST00000528216	TSHZ3	Q63HK5	1081 aa		12.36	□□□□□ -0.43
PGAP2-231	ENST00000528216	SEPT12	Q8IYM1	358 aa		12.36	□□□□□ -0.43
PGAP2-231	ENST00000528216	THRAP3	Q9Y2W1	955 aa	Known RBP	12.36	□□□□□ -0.43
PGAP2-231	ENST00000528216	FSD2	A1L4K1	749 aa		12.35	□□□□□ -0.43
PGAP2-231	ENST00000528216	GOLGA6L3	A6NEY3	463 aa		12.35	□□□□□ -0.43
PGAP2-231	ENST00000528216	PDIA4	P13667	645 aa	Known RBP	12.35	□□□□□ -0.43
PGAP2-231	ENST00000528216	KAZALD1	Q96I82	304 aa		12.35	□□□□□ -0.43
PGAP2-231	ENST00000528216	TEX13A	Q9BXU3	409 aa	Predicted RBP	12.35	□□□□□ -0.43
PGAP2-231	ENST00000528216	SNRK	Q9NRH2	765 aa		12.35	□□□□□ -0.43
PGAP2-231	ENST00000528216	BARGIN	Q6ZT62	677 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	AACS	Q86V21	672 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	MYD88	Q99836	296 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	TM6SF1	Q9BZW5	370 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	USP16	Q9Y5T5	823 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	KCP	Q6ZWJ8	1503 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	SHANK3	Q9BYB0	1731 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	ONECUT3	O60422	494 aa	Predicted RBP	12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	BAG4	O95429	457 aa	Known RBP	12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	MYL6B	P14649	208 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	KCNB2	Q92953	911 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	TMX3	Q96JJ7	454 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	LSG1	Q9H089	658 aa	Known RBP	12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	NUP188	Q5SRE5	1749 aa		12.34	□□□□□ -0.43
PGAP2-231	ENST00000528216	MRE11	P49959	708 aa		12.33	□□□□□ -0.44
PGAP2-231	ENST00000528216	KLHL40	Q2TBA0	621 aa		12.33	□□□□□ -0.44
PGAP2-231	ENST00000528216	VSIG10	Q8N0Z9	540 aa		12.33	□□□□□ -0.44
PGAP2-231	ENST00000528216	SASH1	O94885	1247 aa		12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216	SSFA2	P28290	1259 aa		12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216	GPR108	Q9NPR9	543 aa		12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216	ATG3	Q9NT62	314 aa		12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216	EXOC5	O00471	708 aa		12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216	DDB1	Q16531	1140 aa		12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216	CCDC191	Q8NCU4	936 aa		12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216	CDCA7	Q9BWT1	371 aa	Predicted RBP	12.32	□□□□□ -0.44
PGAP2-231	ENST00000528216		H7C1W4	665 aa		12.31	□□□□□ -0.44
PGAP2-231	ENST00000528216	ATP5J	P18859	108 aa		12.31	□□□□□ -0.44
PGAP2-231	ENST00000528216	CWC25	Q9NXE8	425 aa	Predicted RBP	12.31	□□□□□ -0.44
PGAP2-231	ENST00000528216	FBXO3	Q9UK99	471 aa		12.31	□□□□□ -0.44
PGAP2-231	ENST00000528216	PA2G4	Q9UQ80	394 aa	Known RBP	12.31	□□□□□ -0.44
PGAP2-231	ENST00000528216	ZKSCAN1	P17029	563 aa	Predicted RBP	12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	TRIM28	Q13263	835 aa	Known RBP	12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	RNF20	Q5VTR2	975 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	EAF2	Q96CJ1	260 aa	Predicted RBP	12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	ZSCAN31	Q96LW9	406 aa	Predicted RBP	12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	FOXD4L1	Q9NU39	408 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	PALD1	Q9ULE6	856 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	SNX14	Q9Y5W7	946 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216		A0A087WZG4	1122 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	PSMA5	P28066	241 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	RFX5	P48382	616 aa	Predicted RBP	12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	CASP7	P55210	303 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	KRT27	Q7Z3Y8	459 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	KLHL34	Q8N239	644 aa		12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	SH2B1	Q9NRF2	756 aa	Predicted RBP	12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	ZSCAN21	Q9Y5A6	473 aa	Predicted RBP	12.3	□□□□□ -0.44
PGAP2-231	ENST00000528216	CCDC171	Q6TFL3	1326 aa		12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	FAM182B	Q5T319	152 aa		12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	VPS53	Q5VIR6	699 aa		12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	CWC27	Q6UX04	472 aa	Known RBP	12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	UBE3B	Q7Z3V4	1068 aa		12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	HMG20B	Q9P0W2	317 aa		12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	LIMCH1	Q9UPQ0	1083 aa		12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	SPEF2	Q9C093	1822 aa		12.29	□□□□□ -0.44
PGAP2-231	ENST00000528216	WDR33	Q9C0J8	1336 aa	Known RBP	12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	CIAO1	O76071	339 aa		12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	BRD1	O95696	1058 aa		12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	PTPN12	Q05209	780 aa	Known RBP	12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	DDX54	Q8TDD1	881 aa	Known RBP	12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	TTC14	Q96N46	770 aa		12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	TMOD3	Q9NYL9	352 aa		12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	TJP1	Q07157	1748 aa		12.28	□□□□□ -0.44
PGAP2-231	ENST00000528216	NBPF26	B4DH59	902 aa		12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	MBD3	O95983	291 aa		12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	ANKRD1	Q15327	319 aa		12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	TNNI3K	Q59H18	835 aa		12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	NBPF14	Q5TI25	921 aa		12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	NBPF10	Q6P3W6	841 aa	Known RBP	12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	NBPF15	Q8N660	670 aa		12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	DDX49	Q9Y6V7	483 aa	Known RBP	12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	FPGT-TNNI3K	V9GXZ4	949 aa		12.27	□□□□□ -0.44
PGAP2-231	ENST00000528216	MED23	Q9ULK4	1368 aa		12.27	□□□□□ -0.45
PGAP2-231	ENST00000528216	MAP4K4	O95819	1239 aa	Predicted RBP	12.27	□□□□□ -0.45
PGAP2-231	ENST00000528216	IL15	P40933	162 aa	Predicted RBP	12.27	□□□□□ -0.45
PGAP2-231	ENST00000528216	KRT32	Q14532	448 aa		12.27	□□□□□ -0.45
PGAP2-231	ENST00000528216	NECTIN1	Q15223	517 aa		12.27	□□□□□ -0.45
PGAP2-231	ENST00000528216	TSGA10IP	Q3SY00	556 aa		12.27	□□□□□ -0.45
PGAP2-231	ENST00000528216	EPHA10	Q5JZY3	1008 aa		12.27	□□□□□ -0.45

Retrieved 100 of 20,778 RNA–protein pairs in 349.2 ms