RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 CWF19L2Q2TBE0 894 aaKnown RBP12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 SUSD4Q5VX71 490 aa12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 CLEC4GQ6UXB4 293 aa12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 KSR2Q6VAB6 950 aa12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 NUTM1Q86Y26 1132 aa12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 ZNF34Q8IZ26 560 aa12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 FRAT1Q92837 279 aaPredicted RBP12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 NOB1Q9ULX3 412 aaKnown RBP12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 N4BP2Q86UW6 1770 aaPredicted RBP12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 KIF13BQ9NQT8 1826 aa12.5□□□□□ -0.41
TOPBP1-209ENST00000513818 TULP1O00294 542 aaPredicted RBP12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 NPHP1O15259 732 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 IGKV5-2P06315 115 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 HSP90AB3PQ58FF7 597 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 RTL5Q5HYW3 569 aaPredicted RBP12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 PRR5LQ6MZQ0 368 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 SLC4A10Q6U841 1118 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 NLRP10Q86W26 655 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 NBPF5PQ86XG9 351 aaPredicted RBP12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 CNBD1Q8NA66 436 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 NLGN2Q8NFZ4 835 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 DNAAF4Q8WXU2 420 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 JARID2Q92833 1246 aaPredicted RBP12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 ISCA1Q9BUE6 129 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 METTL22Q9BUU2 404 aaPredicted RBP12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 FHDC1Q9C0D6 1143 aaPredicted RBP12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 WWC3Q9ULE0 1092 aa12.49□□□□□ -0.41
TOPBP1-209ENST00000513818 DDX60Q8IY21 1712 aaKnown RBP12.48□□□□□ -0.41
TOPBP1-209ENST00000513818 NTSR2O95665 410 aa12.48□□□□□ -0.41
TOPBP1-209ENST00000513818 SYNE4Q8N205 404 aa12.48□□□□□ -0.41
TOPBP1-209ENST00000513818 RCAN3Q9UKA8 241 aa12.48□□□□□ -0.41
TOPBP1-209ENST00000513818 LAMB2P55268 1798 aa12.48□□□□□ -0.41
TOPBP1-209ENST00000513818 PTPRCP08575 1304 aa12.47□□□□□ -0.41
TOPBP1-209ENST00000513818 KIF16BQ96L93 1317 aa12.47□□□□□ -0.41
TOPBP1-209ENST00000513818 RGL2O15211 777 aa12.47□□□□□ -0.41
TOPBP1-209ENST00000513818 ERFEQ4G0M1 354 aa12.47□□□□□ -0.41
TOPBP1-209ENST00000513818 GOLGB1Q14789 3259 aaKnown RBP12.47□□□□□ -0.41
TOPBP1-209ENST00000513818 PXDNLA1KZ92 1463 aa12.46□□□□□ -0.41
TOPBP1-209ENST00000513818 CACNA1SQ13698 1873 aa12.46□□□□□ -0.41
TOPBP1-209ENST00000513818 NEURL1BA8MQ27 555 aa12.46□□□□□ -0.41
TOPBP1-209ENST00000513818 CLUAP1Q96AJ1 413 aa12.46□□□□□ -0.41
TOPBP1-209ENST00000513818 IBTKQ9P2D0 1353 aaPredicted RBP12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 PLIN1O60240 522 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 TRIM27P14373 513 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 GTF2E1P29083 439 aaPredicted RBP12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 CHRNA5P30532 468 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 ST5P78524 1137 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 NEXNQ0ZGT2 675 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 PARP10Q53GL7 1025 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 BEND3Q5T5X7 828 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 C3orf67Q6ZVT6 689 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 ERICH6Q7L0X2 663 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 FAM89AQ96GI7 184 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 UTP14AQ9BVJ6 771 aaKnown RBP12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 CWC25Q9NXE8 425 aaPredicted RBP12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 TRMT112Q9UI30 125 aaKnown RBP12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 DLEC1Q9Y238 1755 aa12.45□□□□□ -0.42
TOPBP1-209ENST00000513818 HCLS1P14317 486 aaPredicted RBP12.44□□□□□ -0.42
TOPBP1-209ENST00000513818 BRPF1P55201 1214 aaPredicted RBP12.44□□□□□ -0.42
TOPBP1-209ENST00000513818 PPP1R42Q7Z4L9 355 aa12.44□□□□□ -0.42
TOPBP1-209ENST00000513818 NYXQ9GZU5 481 aa12.44□□□□□ -0.42
TOPBP1-209ENST00000513818 ABCC4O15439 1325 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 SH3TC1Q8TE82 1336 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 BRCA1P38398 1863 aaKnown RBP12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 COL4A1P02462 1669 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 A0A0G2JLW4 131 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 DPEP1P16444 411 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 ATF7IPQ6VMQ6 1270 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 TPTE2Q6XPS3 522 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 CCDC191Q8NCU4 936 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 LINS1Q8NG48 757 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 SYT17Q9BSW7 474 aa12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 API5Q9BZZ5 524 aaKnown RBP12.43□□□□□ -0.42
TOPBP1-209ENST00000513818 RLBP1P12271 317 aa12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 TRIM28Q13263 835 aaKnown RBP12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 GCKRQ14397 625 aa12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 ZKSCAN2Q63HK3 967 aa12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 UBE3BQ7Z3V4 1068 aa12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 C2CD5Q86YS7 1000 aa12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 SRCIN1Q9C0H9 1055 aa12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 CD2APQ9Y5K6 639 aa12.42□□□□□ -0.42
TOPBP1-209ENST00000513818 IRS4O14654 1257 aaPredicted RBP12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 PCCAP05165 728 aaPredicted RBP12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 TAF1P21675 1872 aa12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 RIC1Q4ADV7 1423 aa12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 SLC51AQ86UW1 340 aa12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 PELP1Q8IZL8 1130 aaKnown RBP12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 TMEM57Q8N5G2 664 aa12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 PANK1Q8TE04 598 aa12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 CCDC85AQ96PX6 553 aaPredicted RBP12.41□□□□□ -0.42
TOPBP1-209ENST00000513818 IPO8O15397 1037 aaKnown RBP12.4□□□□□ -0.42
TOPBP1-209ENST00000513818 CASP7P55210 303 aa12.4□□□□□ -0.42
TOPBP1-209ENST00000513818 C20orf194Q5TEA3 1177 aa12.4□□□□□ -0.42
TOPBP1-209ENST00000513818 ZBTB38Q8NAP3 1195 aaPredicted RBP12.4□□□□□ -0.42
TOPBP1-209ENST00000513818 BRIP1Q9BX63 1249 aa12.4□□□□□ -0.42
TOPBP1-209ENST00000513818 MYH3P11055 1940 aa12.4□□□□□ -0.42
TOPBP1-209ENST00000513818 RNF123Q5XPI4 1314 aa12.39□□□□□ -0.43
TOPBP1-209ENST00000513818 SPEF2Q9C093 1822 aa12.39□□□□□ -0.43
TOPBP1-209ENST00000513818 GRM8O00222 908 aa12.39□□□□□ -0.43
TOPBP1-209ENST00000513818 ALDH1L1O75891 902 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms