RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 PXDNLA1KZ92 1463 aa18.95■□□□□ 0.62
NUP54-213ENST00000513352 NEURL1BA8MQ27 555 aa18.94■□□□□ 0.62
NUP54-213ENST00000513352 PTGER2P43116 358 aa18.94■□□□□ 0.62
NUP54-213ENST00000513352 BEND3Q5T5X7 828 aa18.94■□□□□ 0.62
NUP54-213ENST00000513352 CCDC24Q8N4L8 307 aa18.94■□□□□ 0.62
NUP54-213ENST00000513352 CCDC191Q8NCU4 936 aa18.94■□□□□ 0.62
NUP54-213ENST00000513352 TRMT112Q9UI30 125 aaKnown RBP18.94■□□□□ 0.62
NUP54-213ENST00000513352 ST5P78524 1137 aa18.93■□□□□ 0.62
NUP54-213ENST00000513352 RTL5Q5HYW3 569 aaPredicted RBP18.93■□□□□ 0.62
NUP54-213ENST00000513352 TPTE2Q6XPS3 522 aa18.93■□□□□ 0.62
NUP54-213ENST00000513352 DZIP1LQ8IYY4 767 aaKnown RBP18.93■□□□□ 0.62
NUP54-213ENST00000513352 ABCC4O15439 1325 aa18.93■□□□□ 0.62
NUP54-213ENST00000513352 N4BP2Q86UW6 1770 aaPredicted RBP18.93■□□□□ 0.62
NUP54-213ENST00000513352 NTSR2O95665 410 aa18.92■□□□□ 0.62
NUP54-213ENST00000513352 CCT4P50991 539 aaKnown RBP18.92■□□□□ 0.62
NUP54-213ENST00000513352 TRIM28Q13263 835 aaKnown RBP18.92■□□□□ 0.62
NUP54-213ENST00000513352 NUTM1Q86Y26 1132 aa18.92■□□□□ 0.62
NUP54-213ENST00000513352 SGIP1Q9BQI5 828 aa18.92■□□□□ 0.62
NUP54-213ENST00000513352 NRXN2Q9P2S2 1712 aa18.91■□□□□ 0.62
NUP54-213ENST00000513352 ALDH1L1O75891 902 aa18.91■□□□□ 0.62
NUP54-213ENST00000513352 MS4A1P11836 297 aa18.91■□□□□ 0.62
NUP54-213ENST00000513352 RRP1P56182 461 aaKnown RBP18.91■□□□□ 0.62
NUP54-213ENST00000513352 PRR5LQ6MZQ0 368 aa18.91■□□□□ 0.62
NUP54-213ENST00000513352 JARID2Q92833 1246 aaPredicted RBP18.91■□□□□ 0.62
NUP54-213ENST00000513352 IBTKQ9P2D0 1353 aaPredicted RBP18.91■□□□□ 0.62
NUP54-213ENST00000513352 GCKRQ14397 625 aa18.9■□□□□ 0.62
NUP54-213ENST00000513352 ERFEQ4G0M1 354 aa18.9■□□□□ 0.62
NUP54-213ENST00000513352 ITPRIPQ8IWB1 547 aa18.9■□□□□ 0.62
NUP54-213ENST00000513352 PANK1Q8TE04 598 aa18.9■□□□□ 0.62
NUP54-213ENST00000513352 FAM89AQ96GI7 184 aa18.9■□□□□ 0.62
NUP54-213ENST00000513352 C9orf78Q9NZ63 289 aaPredicted RBP18.9■□□□□ 0.62
NUP54-213ENST00000513352 SH3TC1Q8TE82 1336 aa18.9■□□□□ 0.62
NUP54-213ENST00000513352 UBE3BQ7Z3V4 1068 aa18.89■□□□□ 0.61
NUP54-213ENST00000513352 TMEM57Q8N5G2 664 aa18.89■□□□□ 0.61
NUP54-213ENST00000513352 ZBTB38Q8NAP3 1195 aaPredicted RBP18.89■□□□□ 0.61
NUP54-213ENST00000513352 SUPT16HQ9Y5B9 1047 aaKnown RBP18.89■□□□□ 0.61
NUP54-213ENST00000513352 PCCAP05165 728 aaPredicted RBP18.88■□□□□ 0.61
NUP54-213ENST00000513352 RLBP1P12271 317 aa18.88■□□□□ 0.61
NUP54-213ENST00000513352 SYNE4Q8N205 404 aa18.88■□□□□ 0.61
NUP54-213ENST00000513352 RNF123Q5XPI4 1314 aa18.88■□□□□ 0.61
NUP54-213ENST00000513352 ABCC12Q96J65 1359 aa18.88■□□□□ 0.61
NUP54-213ENST00000513352 LRP5O75197 1615 aa18.88■□□□□ 0.61
NUP54-213ENST00000513352 GRM8O00222 908 aa18.87■□□□□ 0.61
NUP54-213ENST00000513352 HCLS1P14317 486 aaPredicted RBP18.87■□□□□ 0.61
NUP54-213ENST00000513352 INTS3Q68E01 1043 aaKnown RBP18.87■□□□□ 0.61
NUP54-213ENST00000513352 C10orf71Q711Q0 1435 aa18.87■□□□□ 0.61
NUP54-213ENST00000513352 IRS4O14654 1257 aaPredicted RBP18.86■□□□□ 0.61
NUP54-213ENST00000513352 ANKRD31Q8N7Z5 1873 aa18.86■□□□□ 0.61
NUP54-213ENST00000513352 C20orf194Q5TEA3 1177 aa18.85■□□□□ 0.61
NUP54-213ENST00000513352 LAMB2P55268 1798 aa18.85■□□□□ 0.61
NUP54-213ENST00000513352 DDX60Q8IY21 1712 aaKnown RBP18.85■□□□□ 0.61
NUP54-213ENST00000513352 H7C1W4 665 aa18.84■□□□□ 0.61
NUP54-213ENST00000513352 HSP90B1P14625 803 aaKnown RBP18.84■□□□□ 0.61
NUP54-213ENST00000513352 PDE3AQ14432 1141 aa18.84■□□□□ 0.61
NUP54-213ENST00000513352 BRIP1Q9BX63 1249 aa18.84■□□□□ 0.61
NUP54-213ENST00000513352 COG6Q9Y2V7 657 aa18.84■□□□□ 0.61
NUP54-213ENST00000513352 TNRC6CQ9HCJ0 1690 aaKnown RBP18.84■□□□□ 0.61
NUP54-213ENST00000513352 KIF13BQ9NQT8 1826 aa18.84■□□□□ 0.61
NUP54-213ENST00000513352 MYH3P11055 1940 aa18.83■□□□□ 0.6
NUP54-213ENST00000513352 UBTFL1P0CB47 393 aaPredicted RBP18.83■□□□□ 0.6
NUP54-213ENST00000513352 PDE6BP35913 854 aa18.83■□□□□ 0.6
NUP54-213ENST00000513352 FHDC1Q9C0D6 1143 aaPredicted RBP18.83■□□□□ 0.6
NUP54-213ENST00000513352 CDHR2Q9BYE9 1310 aa18.82■□□□□ 0.6
NUP54-213ENST00000513352 MVPQ14764 893 aaKnown RBP18.82■□□□□ 0.6
NUP54-213ENST00000513352 NLRP3Q96P20 1036 aa18.82■□□□□ 0.6
NUP54-213ENST00000513352 MEIS3Q99687 375 aa18.82■□□□□ 0.6
NUP54-213ENST00000513352 USP44Q9H0E7 712 aa18.82■□□□□ 0.6
NUP54-213ENST00000513352 CD2APQ9Y5K6 639 aa18.82■□□□□ 0.6
NUP54-213ENST00000513352 PDE8AO60658 829 aa18.81■□□□□ 0.6
NUP54-213ENST00000513352 GNAI3P08754 354 aa18.81■□□□□ 0.6
NUP54-213ENST00000513352 NBPF7P0C2Y1 421 aaPredicted RBP18.81■□□□□ 0.6
NUP54-213ENST00000513352 C2CD5Q86YS7 1000 aa18.81■□□□□ 0.6
NUP54-213ENST00000513352 RIC1Q4ADV7 1423 aa18.81■□□□□ 0.6
NUP54-213ENST00000513352 COL11A2P13942 1736 aaPredicted RBP18.8■□□□□ 0.6
NUP54-213ENST00000513352 H0YIN7 160 aa18.8■□□□□ 0.6
NUP54-213ENST00000513352 CHRNA5P30532 468 aa18.8■□□□□ 0.6
NUP54-213ENST00000513352 CASP7P55210 303 aa18.8■□□□□ 0.6
NUP54-213ENST00000513352 SLC10A5Q5PT55 438 aa18.8■□□□□ 0.6
NUP54-213ENST00000513352 C3orf67Q6ZVT6 689 aa18.8■□□□□ 0.6
NUP54-213ENST00000513352 RPGRQ92834 1020 aaKnown RBP18.8■□□□□ 0.6
NUP54-213ENST00000513352 SUCLG2Q96I99 432 aa18.8■□□□□ 0.6
NUP54-213ENST00000513352 CCDC85AQ96PX6 553 aaPredicted RBP18.8■□□□□ 0.6
NUP54-213ENST00000513352 A0A0G2JLW4 131 aa18.79■□□□□ 0.6
NUP54-213ENST00000513352 CTSWP56202 376 aa18.79■□□□□ 0.6
NUP54-213ENST00000513352 NLGN2Q8NFZ4 835 aa18.79■□□□□ 0.6
NUP54-213ENST00000513352 DDX19BQ9UMR2 479 aa18.79■□□□□ 0.6
NUP54-213ENST00000513352 CHMP3Q9Y3E7 222 aa18.79■□□□□ 0.6
NUP54-213ENST00000513352 UTYO14607 1347 aa18.78■□□□□ 0.6
NUP54-213ENST00000513352 CACNA1SQ13698 1873 aa18.78■□□□□ 0.6
NUP54-213ENST00000513352 DPEP1P16444 411 aa18.78■□□□□ 0.6
NUP54-213ENST00000513352 ZNF622Q969S3 477 aaKnown RBP eCLIP18.78■□□□□ 0.6
NUP54-213ENST00000513352 WWC3Q9ULE0 1092 aa18.78■□□□□ 0.6
NUP54-213ENST00000513352 HDAC5Q9UQL6 1122 aa18.78■□□□□ 0.6
NUP54-213ENST00000513352 TGFB2P61812 414 aa18.77■□□□□ 0.6
NUP54-213ENST00000513352 IRX6P78412 446 aaPredicted RBP18.77■□□□□ 0.6
NUP54-213ENST00000513352 CCDC152Q4G0S7 254 aa18.77■□□□□ 0.6
NUP54-213ENST00000513352 PDZRN3Q9UPQ7 1066 aa18.77■□□□□ 0.6
NUP54-213ENST00000513352 LRRFIP2Q9Y608 721 aaKnown RBP18.77■□□□□ 0.6
NUP54-213ENST00000513352 CRBNQ96SW2 442 aa18.76■□□□□ 0.59
NUP54-213ENST00000513352 SYT17Q9BSW7 474 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms