RNA–Protein interactions for RNA: ENST00000502394.1

MATR3-231, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 589 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-231	ENST00000502394	MYD88	Q99836	296 aa		15.31	■□□□□ 0.04
MATR3-231	ENST00000502394	ISCA1	Q9BUE6	129 aa		15.31	■□□□□ 0.04
MATR3-231	ENST00000502394	ZBTB3	Q9H5J0	574 aa		15.31	■□□□□ 0.04
MATR3-231	ENST00000502394	BCOR	Q6W2J9	1755 aa		15.31	■□□□□ 0.04
MATR3-231	ENST00000502394	TCIRG1	Q13488	830 aa		15.3	■□□□□ 0.04
MATR3-231	ENST00000502394	AMIGO3	Q86WK7	504 aa		15.3	■□□□□ 0.04
MATR3-231	ENST00000502394	KDM2B	Q8NHM5	1336 aa		15.3	■□□□□ 0.04
MATR3-231	ENST00000502394	SCN7A	Q01118	1682 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394		A0A087WZG4	1122 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	GNAI3	P08754	354 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	HMGB2	P26583	209 aa	Known RBP	15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	NEXN	Q0ZGT2	675 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	GCKR	Q14397	625 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	HLF	Q16534	295 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	CCDC136	Q96JN2	1154 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	CAMKK2	Q96RR4	588 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	ZNF330	Q9Y3S2	320 aa	Predicted RBP	15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	UBR3	Q6ZT12	1888 aa		15.29	■□□□□ 0.04
MATR3-231	ENST00000502394	GNPAT	O15228	680 aa		15.28	■□□□□ 0.04
MATR3-231	ENST00000502394	TBC1D2B	Q9UPU7	963 aa		15.28	■□□□□ 0.04
MATR3-231	ENST00000502394	ANKRD36C	Q5JPF3	1778 aa		15.28	■□□□□ 0.04
MATR3-231	ENST00000502394	NUP98	P52948	1817 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	ATP5J2-PTCD1	G3V325	749 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	GRM8	O00222	908 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	NBPF7	P0C2Y1	421 aa	Predicted RBP	15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	CASP7	P55210	303 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	HDAC1	Q13547	482 aa	Predicted RBP	15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	HSP90AB3P	Q58FF7	597 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	SIRT2	Q8IXJ6	389 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	CCDC191	Q8NCU4	936 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	C1orf115	Q9H7X2	142 aa		15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	RTCB	Q9Y3I0	505 aa	Known RBP	15.27	■□□□□ 0.04
MATR3-231	ENST00000502394	C4A	P0C0L4	1744 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	GALR2	O43603	387 aa	Predicted RBP	15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	IGHD	P01880	384 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	GNAI2	P04899	355 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	UBTFL1	P0CB47	393 aa	Predicted RBP	15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	CEP85	Q6P2H3	762 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	ZNF34	Q8IZ26	560 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	ANKRD44	Q8N8A2	993 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	AK7	Q96M32	723 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	BCL2L12	Q9HB09	334 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	NARF	Q9UHQ1	456 aa		15.26	■□□□□ 0.03
MATR3-231	ENST00000502394	AFDN	P55196	1824 aa	Known RBP	15.26	■□□□□ 0.03
MATR3-231	ENST00000502394		H7C1W4	665 aa		15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	SSFA2	P28290	1259 aa		15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	CLEC4G	Q6UXB4	293 aa		15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	SMIM5	Q71RC9	77 aa		15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	NPM2	Q86SE8	214 aa	Known RBP	15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	ARHGEF1	Q92888	912 aa	Known RBP	15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	KAZALD1	Q96I82	304 aa		15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	CWC25	Q9NXE8	425 aa	Predicted RBP	15.25	■□□□□ 0.03
MATR3-231	ENST00000502394	UBN2	Q6ZU65	1347 aa		15.24	■□□□□ 0.03
MATR3-231	ENST00000502394	ZNF827	Q17R98	1081 aa		15.24	■□□□□ 0.03
MATR3-231	ENST00000502394	NLRP10	Q86W26	655 aa		15.24	■□□□□ 0.03
MATR3-231	ENST00000502394	RPAP2	Q8IXW5	612 aa	Predicted RBP	15.24	■□□□□ 0.03
MATR3-231	ENST00000502394	LRRFIP2	Q9Y608	721 aa	Known RBP	15.24	■□□□□ 0.03
MATR3-231	ENST00000502394	USP42	Q9H9J4	1324 aa	Known RBP	15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	POTEI	P0CG38	1075 aa		15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	EN1	Q05925	392 aa	Predicted RBP	15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	MTX1	Q13505	466 aa		15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	EZH2	Q15910	746 aa	Known RBP	15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	CENPQ	Q7L2Z9	268 aa	Predicted RBP	15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	SUCLG2	Q96I99	432 aa		15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	C9orf78	Q9NZ63	289 aa	Predicted RBP	15.23	■□□□□ 0.03
MATR3-231	ENST00000502394	TUBGCP6	Q96RT7	1819 aa		15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	PCCA	P05165	728 aa	Predicted RBP	15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	BAG6	P46379	1132 aa		15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	ATP8B2	P98198	1209 aa		15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	TRAPPC3L	Q5T215	181 aa		15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	CCDC125	Q86Z20	511 aa		15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	SRP68	Q9UHB9	627 aa	Known RBP	15.22	■□□□□ 0.03
MATR3-231	ENST00000502394	PARP10	Q53GL7	1025 aa		15.21	■□□□□ 0.03
MATR3-231	ENST00000502394	SMC5	Q8IY18	1101 aa		15.21	■□□□□ 0.03
MATR3-231	ENST00000502394	KIF12	Q96FN5	646 aa		15.21	■□□□□ 0.03
MATR3-231	ENST00000502394	ARX	Q96QS3	562 aa		15.21	■□□□□ 0.03
MATR3-231	ENST00000502394	RWDD1	Q9H446	243 aa	Predicted RBP	15.21	■□□□□ 0.03
MATR3-231	ENST00000502394	HDAC5	Q9UQL6	1122 aa		15.21	■□□□□ 0.03
MATR3-231	ENST00000502394	ZNF652	Q9Y2D9	606 aa		15.21	■□□□□ 0.03
MATR3-231	ENST00000502394	COL24A1	Q17RW2	1714 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	CDHR2	Q9BYE9	1310 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	GPT	P24298	496 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	RABL6	Q3YEC7	729 aa	Predicted RBP	15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	EPHA10	Q5JZY3	1008 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	USPL1	Q5W0Q7	1092 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	UBE3B	Q7Z3V4	1068 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	SSH3	Q8TE77	659 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	PLA2G12B	Q9BX93	195 aa		15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	ANO8	Q9HCE9	1232 aa	Predicted RBP	15.2	■□□□□ 0.02
MATR3-231	ENST00000502394	PNMA6E	A0A0J9YXQ4	647 aa		15.19	■□□□□ 0.02
MATR3-231	ENST00000502394	PHF14	O94880	888 aa		15.19	■□□□□ 0.02
MATR3-231	ENST00000502394	SF3B2	Q13435	895 aa	Known RBP	15.19	■□□□□ 0.02
MATR3-231	ENST00000502394	DEFB132	Q7Z7B7	95 aa		15.19	■□□□□ 0.02
MATR3-231	ENST00000502394	KLHL34	Q8N239	644 aa		15.19	■□□□□ 0.02
MATR3-231	ENST00000502394	BICC1	Q9H694	974 aa	Known RBP	15.19	■□□□□ 0.02
MATR3-231	ENST00000502394	QSER1	Q2KHR3	1735 aa		15.18	■□□□□ 0.02
MATR3-231	ENST00000502394	ZPR1	O75312	459 aa		15.18	■□□□□ 0.02
MATR3-231	ENST00000502394	NTSR2	O95665	410 aa		15.18	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms