RNA–Protein interactions for RNA: ENST00000493940.2

HSPG2-212, Transcript of heparan sulfate proteoglycan 2, humanhuman

TSL 5

Gene HSPG2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2-212ENST00000493940 CRY2Q49AN0 593 aa16.43■□□□□ 0.22
HSPG2-212ENST00000493940 RBM46Q8TBY0 533 aaKnown RBP16.43■□□□□ 0.22
HSPG2-212ENST00000493940 TSR2Q969E8 191 aaKnown RBP16.43■□□□□ 0.22
HSPG2-212ENST00000493940 PHAXQ9H814 394 aaKnown RBP16.43■□□□□ 0.22
HSPG2-212ENST00000493940 SNED1Q8TER0 1413 aa16.43■□□□□ 0.22
HSPG2-212ENST00000493940 GTF2E1P29083 439 aaPredicted RBP16.42■□□□□ 0.22
HSPG2-212ENST00000493940 WWC1Q8IX03 1113 aa16.42■□□□□ 0.22
HSPG2-212ENST00000493940 RRAGCQ9HB90 399 aa16.42■□□□□ 0.22
HSPG2-212ENST00000493940 COL4A1P02462 1669 aa16.42■□□□□ 0.22
HSPG2-212ENST00000493940 POTECB2RU33 542 aa16.41■□□□□ 0.22
HSPG2-212ENST00000493940 HOXB7P09629 217 aa16.41■□□□□ 0.22
HSPG2-212ENST00000493940 GNAI1P63096 354 aa16.41■□□□□ 0.22
HSPG2-212ENST00000493940 TCIRG1Q13488 830 aa16.41■□□□□ 0.22
HSPG2-212ENST00000493940 NLRP10Q86W26 655 aa16.41■□□□□ 0.22
HSPG2-212ENST00000493940 NYXQ9GZU5 481 aa16.41■□□□□ 0.22
HSPG2-212ENST00000493940 IBTKQ9P2D0 1353 aaPredicted RBP16.4■□□□□ 0.22
HSPG2-212ENST00000493940 RIC1Q4ADV7 1423 aa16.4■□□□□ 0.22
HSPG2-212ENST00000493940 FSTL1Q12841 308 aa16.4■□□□□ 0.22
HSPG2-212ENST00000493940 SLC10A5Q5PT55 438 aa16.4■□□□□ 0.22
HSPG2-212ENST00000493940 SALL2Q9Y467 1007 aaPredicted RBP16.4■□□□□ 0.22
HSPG2-212ENST00000493940 COL4A5P29400 1685 aa16.4■□□□□ 0.22
HSPG2-212ENST00000493940 HCLS1P14317 486 aaPredicted RBP16.39■□□□□ 0.21
HSPG2-212ENST00000493940 DBF4Q9UBU7 674 aaPredicted RBP16.39■□□□□ 0.21
HSPG2-212ENST00000493940 LTBP3Q9NS15 1303 aa16.39■□□□□ 0.21
HSPG2-212ENST00000493940 CACNA1FO60840 1977 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 ATP5J2-PTCD1G3V325 749 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 TCERG1O14776 1098 aaKnown RBP16.38■□□□□ 0.21
HSPG2-212ENST00000493940 HOXA10P31260 410 aaPredicted RBP16.38■□□□□ 0.21
HSPG2-212ENST00000493940 CCDC27Q2M243 656 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 PARP10Q53GL7 1025 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 ANKRD13DQ6ZTN6 518 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 PPP1R42Q7Z4L9 355 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 C16orf71Q8IYS4 520 aaPredicted RBP16.38■□□□□ 0.21
HSPG2-212ENST00000493940 PLBD2Q8NHP8 589 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 ISCA1Q9BUE6 129 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 UTP14AQ9BVJ6 771 aaKnown RBP16.38■□□□□ 0.21
HSPG2-212ENST00000493940 SPINK5Q9NQ38 1064 aaPredicted RBP16.38■□□□□ 0.21
HSPG2-212ENST00000493940 WDR90Q96KV7 1748 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 KDM2BQ8NHM5 1336 aa16.38■□□□□ 0.21
HSPG2-212ENST00000493940 GLTPD2A6NH11 291 aa16.37■□□□□ 0.21
HSPG2-212ENST00000493940 TAOK3Q9H2K8 898 aa16.37■□□□□ 0.21
HSPG2-212ENST00000493940 ZNF277Q9NRM2 450 aaPredicted RBP16.37■□□□□ 0.21
HSPG2-212ENST00000493940 ALDH1B1P30837 517 aa16.36■□□□□ 0.21
HSPG2-212ENST00000493940 CCDC93Q567U6 631 aa16.36■□□□□ 0.21
HSPG2-212ENST00000493940 FAM9BQ8IZU0 186 aa16.36■□□□□ 0.21
HSPG2-212ENST00000493940 KLRG1Q96E93 195 aa16.36■□□□□ 0.21
HSPG2-212ENST00000493940 HYPKQ9NX55 129 aa16.36■□□□□ 0.21
HSPG2-212ENST00000493940 JMYQ8N9B5 988 aa16.35■□□□□ 0.21
HSPG2-212ENST00000493940 TRMT112Q9UI30 125 aaKnown RBP16.35■□□□□ 0.21
HSPG2-212ENST00000493940 DDNO94850 711 aaPredicted RBP16.34■□□□□ 0.21
HSPG2-212ENST00000493940 FKBP4Q02790 459 aaKnown RBP eCLIP16.34■□□□□ 0.21
HSPG2-212ENST00000493940 CALD1Q05682 793 aaKnown RBP16.34■□□□□ 0.21
HSPG2-212ENST00000493940 HSP90AB3PQ58FF7 597 aa16.34■□□□□ 0.21
HSPG2-212ENST00000493940 RTL5Q5HYW3 569 aaPredicted RBP16.34■□□□□ 0.21
HSPG2-212ENST00000493940 G2E3Q7L622 706 aa16.34■□□□□ 0.21
HSPG2-212ENST00000493940 FAM89AQ96GI7 184 aa16.34■□□□□ 0.21
HSPG2-212ENST00000493940 CRAMP1Q96RY5 1269 aa16.34■□□□□ 0.21
HSPG2-212ENST00000493940 ZC3H4Q9UPT8 1303 aaKnown RBP16.34■□□□□ 0.21
HSPG2-212ENST00000493940 HTRA3P83110 453 aa16.33■□□□□ 0.2
HSPG2-212ENST00000493940 JARID2Q92833 1246 aaPredicted RBP16.33■□□□□ 0.2
HSPG2-212ENST00000493940 RPGRQ92834 1020 aaKnown RBP16.33■□□□□ 0.2
HSPG2-212ENST00000493940 NLRP3Q96P20 1036 aa16.33■□□□□ 0.2
HSPG2-212ENST00000493940 ABCC4O15439 1325 aa16.33■□□□□ 0.2
HSPG2-212ENST00000493940 SOGA3Q5TF21 947 aa16.32■□□□□ 0.2
HSPG2-212ENST00000493940 RBM17Q96I25 401 aaKnown RBP16.32■□□□□ 0.2
HSPG2-212ENST00000493940 MYH3P11055 1940 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 SCN4AP35499 1836 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 IL16Q14005 1332 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 SH3TC1Q8TE82 1336 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 ZNF541Q9H0D2 1346 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 TRIM28Q13263 835 aaKnown RBP16.31■□□□□ 0.2
HSPG2-212ENST00000493940 NCBP3Q53F19 620 aaKnown RBP16.31■□□□□ 0.2
HSPG2-212ENST00000493940 RIC3Q7Z5B4 369 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 RTKN2Q8IZC4 609 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 MYD88Q99836 296 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 LRRC37AA6NMS7 1700 aa16.31■□□□□ 0.2
HSPG2-212ENST00000493940 FANCIQ9NVI1 1328 aa16.3■□□□□ 0.2
HSPG2-212ENST00000493940 PPEF1O14829 653 aaPredicted RBP16.3■□□□□ 0.2
HSPG2-212ENST00000493940 POTEIP0CG38 1075 aa16.3■□□□□ 0.2
HSPG2-212ENST00000493940 POTEJP0CG39 1038 aa16.3■□□□□ 0.2
HSPG2-212ENST00000493940 TWISTNBQ3B726 338 aaPredicted RBP16.3■□□□□ 0.2
HSPG2-212ENST00000493940 CCDC30Q5VVM6 783 aa16.3■□□□□ 0.2
HSPG2-212ENST00000493940 SMC1BQ8NDV3 1235 aa16.3■□□□□ 0.2
HSPG2-212ENST00000493940 LTBP1Q14766 1721 aa16.3■□□□□ 0.2
HSPG2-212ENST00000493940 SPEF2Q9C093 1822 aa16.29■□□□□ 0.2
HSPG2-212ENST00000493940 RNF123Q5XPI4 1314 aa16.29■□□□□ 0.2
HSPG2-212ENST00000493940 VEGFAP15692 232 aaPredicted RBP16.29■□□□□ 0.2
HSPG2-212ENST00000493940 IARSP41252 1262 aaKnown RBP16.29■□□□□ 0.2
HSPG2-212ENST00000493940 WDR63Q8IWG1 891 aa16.29■□□□□ 0.2
HSPG2-212ENST00000493940 PSMD1Q99460 953 aa16.29■□□□□ 0.2
HSPG2-212ENST00000493940 PCNTO95613 3336 aa16.29■□□□□ 0.2
HSPG2-212ENST00000493940 VAMP4O75379 141 aa16.28■□□□□ 0.2
HSPG2-212ENST00000493940 IGKV5-2P06315 115 aa16.28■□□□□ 0.2
HSPG2-212ENST00000493940 EXOSC9Q06265 439 aaKnown RBP16.28■□□□□ 0.2
HSPG2-212ENST00000493940 COL13A1Q5TAT6 717 aaPredicted RBP16.28■□□□□ 0.2
HSPG2-212ENST00000493940 ATP6V0A2Q9Y487 856 aa16.28■□□□□ 0.2
HSPG2-212ENST00000493940 DUOX1Q9NRD9 1551 aa16.28■□□□□ 0.2
HSPG2-212ENST00000493940 PI4KAP2A4QPH2 592 aa16.27■□□□□ 0.2
HSPG2-212ENST00000493940 FZD9O00144 591 aa16.27■□□□□ 0.2
HSPG2-212ENST00000493940 GOLGA2Q08379 1002 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms