RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 HSP90AB3PQ58FF7 597 aa21.77■■□□□ 1.08
LIME1-208ENST00000493265 CLEC4GQ6UXB4 293 aa21.77■■□□□ 1.08
LIME1-208ENST00000493265 PXDNLA1KZ92 1463 aa21.77■■□□□ 1.07
LIME1-208ENST00000493265 RLBP1P12271 317 aa21.76■■□□□ 1.07
LIME1-208ENST00000493265 ABCC4O15439 1325 aa21.76■■□□□ 1.07
LIME1-208ENST00000493265 IGKV5-2P06315 115 aa21.75■■□□□ 1.07
LIME1-208ENST00000493265 BEND3Q5T5X7 828 aa21.75■■□□□ 1.07
LIME1-208ENST00000493265 NLGN1Q8N2Q7 840 aa21.75■■□□□ 1.07
LIME1-208ENST00000493265 TMEM57Q8N5G2 664 aa21.75■■□□□ 1.07
LIME1-208ENST00000493265 SETDB2Q96T68 719 aa21.75■■□□□ 1.07
LIME1-208ENST00000493265 SRCIN1Q9C0H9 1055 aa21.75■■□□□ 1.07
LIME1-208ENST00000493265 MS4A1P11836 297 aa21.74■■□□□ 1.07
LIME1-208ENST00000493265 IRX6P78412 446 aaPredicted RBP21.74■■□□□ 1.07
LIME1-208ENST00000493265 NFIXQ14938 502 aa21.74■■□□□ 1.07
LIME1-208ENST00000493265 ZNF34Q8IZ26 560 aa21.74■■□□□ 1.07
LIME1-208ENST00000493265 LINS1Q8NG48 757 aa21.74■■□□□ 1.07
LIME1-208ENST00000493265 UBN2Q6ZU65 1347 aa21.74■■□□□ 1.07
LIME1-208ENST00000493265 ANKRD36CQ5JPF3 1778 aa21.74■■□□□ 1.07
LIME1-208ENST00000493265 AFDNP55196 1824 aaKnown RBP21.73■■□□□ 1.07
LIME1-208ENST00000493265 CCT4P50991 539 aaKnown RBP21.73■■□□□ 1.07
LIME1-208ENST00000493265 ITPRIPQ8IWB1 547 aa21.73■■□□□ 1.07
LIME1-208ENST00000493265 ISCA1Q9BUE6 129 aa21.73■■□□□ 1.07
LIME1-208ENST00000493265 NEURL1BA8MQ27 555 aa21.72■■□□□ 1.07
LIME1-208ENST00000493265 RTL5Q5HYW3 569 aaPredicted RBP21.72■■□□□ 1.07
LIME1-208ENST00000493265 NLRP10Q86W26 655 aa21.72■■□□□ 1.07
LIME1-208ENST00000493265 JARID2Q92833 1246 aaPredicted RBP21.72■■□□□ 1.07
LIME1-208ENST00000493265 CWC25Q9NXE8 425 aaPredicted RBP21.72■■□□□ 1.07
LIME1-208ENST00000493265 COG6Q9Y2V7 657 aa21.72■■□□□ 1.07
LIME1-208ENST00000493265 RNF123Q5XPI4 1314 aa21.72■■□□□ 1.07
LIME1-208ENST00000493265 RGL2O15211 777 aa21.71■■□□□ 1.07
LIME1-208ENST00000493265 HSPA6P17066 643 aa21.71■■□□□ 1.07
LIME1-208ENST00000493265 SUSD4Q5VX71 490 aa21.71■■□□□ 1.07
LIME1-208ENST00000493265 C10orf71Q711Q0 1435 aa21.71■■□□□ 1.07
LIME1-208ENST00000493265 A0A0G2JLW4 131 aa21.7■■□□□ 1.06
LIME1-208ENST00000493265 NPHP1O15259 732 aa21.7■■□□□ 1.06
LIME1-208ENST00000493265 ALDH1L1O75891 902 aa21.7■■□□□ 1.06
LIME1-208ENST00000493265 TM4SF1P30408 202 aa21.7■■□□□ 1.06
LIME1-208ENST00000493265 DDR1Q08345 913 aa21.7■■□□□ 1.06
LIME1-208ENST00000493265 PDE3AQ14432 1141 aa21.7■■□□□ 1.06
LIME1-208ENST00000493265 INTS3Q68E01 1043 aaKnown RBP21.7■■□□□ 1.06
LIME1-208ENST00000493265 BCS1LQ9Y276 419 aa21.7■■□□□ 1.06
LIME1-208ENST00000493265 BRCA1P38398 1863 aaKnown RBP21.69■■□□□ 1.06
LIME1-208ENST00000493265 GCKRQ14397 625 aa21.69■■□□□ 1.06
LIME1-208ENST00000493265 PARP10Q53GL7 1025 aa21.69■■□□□ 1.06
LIME1-208ENST00000493265 NBPF5PQ86XG9 351 aaPredicted RBP21.69■■□□□ 1.06
LIME1-208ENST00000493265 CCDC24Q8N4L8 307 aa21.69■■□□□ 1.06
LIME1-208ENST00000493265 CCDC191Q8NCU4 936 aa21.69■■□□□ 1.06
LIME1-208ENST00000493265 C9orf78Q9NZ63 289 aaPredicted RBP21.69■■□□□ 1.06
LIME1-208ENST00000493265 TRMT112Q9UI30 125 aaKnown RBP21.69■■□□□ 1.06
LIME1-208ENST00000493265 PARP3Q9Y6F1 533 aa21.69■■□□□ 1.06
LIME1-208ENST00000493265 CARMIL3Q8ND23 1372 aa21.69■■□□□ 1.06
LIME1-208ENST00000493265 KIF3CO14782 793 aa21.68■■□□□ 1.06
LIME1-208ENST00000493265 GTF2E1P29083 439 aaPredicted RBP21.68■■□□□ 1.06
LIME1-208ENST00000493265 TGFB2P61812 414 aa21.68■■□□□ 1.06
LIME1-208ENST00000493265 TRIM28Q13263 835 aaKnown RBP21.68■■□□□ 1.06
LIME1-208ENST00000493265 PPP1R42Q7Z4L9 355 aa21.68■■□□□ 1.06
LIME1-208ENST00000493265 UTP14AQ9BVJ6 771 aaKnown RBP21.68■■□□□ 1.06
LIME1-208ENST00000493265 POLRMTO00411 1230 aaKnown RBP21.67■■□□□ 1.06
LIME1-208ENST00000493265 SERPINB2P05120 415 aa21.67■■□□□ 1.06
LIME1-208ENST00000493265 NUTM1Q86Y26 1132 aa21.67■■□□□ 1.06
LIME1-208ENST00000493265 FAM89AQ96GI7 184 aa21.67■■□□□ 1.06
LIME1-208ENST00000493265 DPEP1P16444 411 aa21.66■■□□□ 1.06
LIME1-208ENST00000493265 MVPQ14764 893 aaKnown RBP21.66■■□□□ 1.06
LIME1-208ENST00000493265 UBE3BQ7Z3V4 1068 aa21.66■■□□□ 1.06
LIME1-208ENST00000493265 SYNE4Q8N205 404 aa21.66■■□□□ 1.06
LIME1-208ENST00000493265 CRBNQ96SW2 442 aa21.66■■□□□ 1.06
LIME1-208ENST00000493265 NTSR2O95665 410 aa21.65■■□□□ 1.06
LIME1-208ENST00000493265 IFFO2Q5TF58 517 aa21.65■■□□□ 1.06
LIME1-208ENST00000493265 ARHGAP27Q6ZUM4 889 aa21.65■■□□□ 1.06
LIME1-208ENST00000493265 CNBD1Q8NA66 436 aa21.65■■□□□ 1.06
LIME1-208ENST00000493265 NYXQ9GZU5 481 aa21.65■■□□□ 1.06
LIME1-208ENST00000493265 GRM8O00222 908 aa21.64■■□□□ 1.05
LIME1-208ENST00000493265 ERFEQ4G0M1 354 aa21.64■■□□□ 1.05
LIME1-208ENST00000493265 TPTE2Q6XPS3 522 aa21.64■■□□□ 1.05
LIME1-208ENST00000493265 MEIS3Q99687 375 aa21.64■■□□□ 1.05
LIME1-208ENST00000493265 ARFGEF1Q9Y6D6 1849 aa21.64■■□□□ 1.05
LIME1-208ENST00000493265 PCCAP05165 728 aaPredicted RBP21.63■■□□□ 1.05
LIME1-208ENST00000493265 NBPF7P0C2Y1 421 aaPredicted RBP21.63■■□□□ 1.05
LIME1-208ENST00000493265 ZBTB38Q8NAP3 1195 aaPredicted RBP21.63■■□□□ 1.05
LIME1-208ENST00000493265 USP44Q9H0E7 712 aa21.63■■□□□ 1.05
LIME1-208ENST00000493265 SH3TC1Q8TE82 1336 aa21.62■■□□□ 1.05
LIME1-208ENST00000493265 HCLS1P14317 486 aaPredicted RBP21.62■■□□□ 1.05
LIME1-208ENST00000493265 PRR5LQ6MZQ0 368 aa21.62■■□□□ 1.05
LIME1-208ENST00000493265 H7C1W4 665 aa21.61■■□□□ 1.05
LIME1-208ENST00000493265 NEFLP07196 543 aa21.61■■□□□ 1.05
LIME1-208ENST00000493265 UBTFL1P0CB47 393 aaPredicted RBP21.61■■□□□ 1.05
LIME1-208ENST00000493265 ST5P78524 1137 aa21.61■■□□□ 1.05
LIME1-208ENST00000493265 DDX19BQ9UMR2 479 aa21.61■■□□□ 1.05
LIME1-208ENST00000493265 IRS4O14654 1257 aaPredicted RBP21.6■■□□□ 1.05
LIME1-208ENST00000493265 ABCC12Q96J65 1359 aa21.6■■□□□ 1.05
LIME1-208ENST00000493265 ZBTB7BO15156 539 aaPredicted RBP21.59■■□□□ 1.05
LIME1-208ENST00000493265 GNAI3P08754 354 aa21.59■■□□□ 1.05
LIME1-208ENST00000493265 EXOC6Q8TAG9 804 aa21.59■■□□□ 1.05
LIME1-208ENST00000493265 C1orf115Q9H7X2 142 aa21.59■■□□□ 1.05
LIME1-208ENST00000493265 IBTKQ9P2D0 1353 aaPredicted RBP21.59■■□□□ 1.05
LIME1-208ENST00000493265 CASP7P55210 303 aa21.58■■□□□ 1.05
LIME1-208ENST00000493265 SUCLG2Q96I99 432 aa21.58■■□□□ 1.05
LIME1-208ENST00000493265 KCNA3P22001 575 aa21.57■■□□□ 1.04
LIME1-208ENST00000493265 NMRK2Q9NPI5 230 aa21.57■■□□□ 1.04
LIME1-208ENST00000493265 LRRFIP2Q9Y608 721 aaKnown RBP21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms