RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CTR9Q6PD62 1173 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 CALCOCO1Q9P1Z2 691 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 ZNF652Q9Y2D9 606 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 PLB1Q6P1J6 1458 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 DHX29Q7Z478 1369 aaKnown RBP20.3■□□□□ 0.84
NPHP4-209ENST00000489180 NEBLO76041 1014 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 VAT1LQ9HCJ6 419 aa20.3■□□□□ 0.84
NPHP4-209ENST00000489180 IDEP14735 1019 aa20.29■□□□□ 0.84
NPHP4-209ENST00000489180 TMCO5BA8MYB1 307 aa20.29■□□□□ 0.84
NPHP4-209ENST00000489180 FGFR1OPO95684 399 aaKnown RBP20.29■□□□□ 0.84
NPHP4-209ENST00000489180 FOXO3O43524 673 aa20.29■□□□□ 0.84
NPHP4-209ENST00000489180 PIP4K2BP78356 416 aa20.29■□□□□ 0.84
NPHP4-209ENST00000489180 TRMT1LQ7Z2T5 733 aaKnown RBP20.29■□□□□ 0.84
NPHP4-209ENST00000489180 RAB34Q9BZG1 259 aa20.29■□□□□ 0.84
NPHP4-209ENST00000489180 RNF216Q9NWF9 866 aaPredicted RBP20.29■□□□□ 0.84
NPHP4-209ENST00000489180 CCDC102BQ68D86 513 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 INCENPQ9NQS7 918 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 CETN2P41208 172 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 NOLC1Q14978 699 aaKnown RBP eCLIP20.28■□□□□ 0.842e-7■■■■■ 29.2
NPHP4-209ENST00000489180 JADE2Q9NQC1 790 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 PIK3R4Q99570 1358 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 ZPR1O75312 459 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 DESP17661 470 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 CCDC150Q8NCX0 1101 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 ALS2CR12Q96Q35 445 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 IQGAP2Q13576 1575 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 CCDC40Q4G0X9 1142 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 CCDC186Q7Z3E2 898 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 NCOA7Q8NI08 942 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 PHF8Q9UPP1 1060 aa20.28■□□□□ 0.84
NPHP4-209ENST00000489180 TNIP1Q15025 636 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 SPECC1Q5M775 1068 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 PDE1AP54750 535 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 TCERG1LQ5VWI1 586 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 PRIMPOLQ96LW4 560 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 PRPF4BQ13523 1007 aaKnown RBP20.27■□□□□ 0.84
NPHP4-209ENST00000489180 LDHAL6AQ6ZMR3 332 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 ESYT1Q9BSJ8 1104 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 TMOD2Q9NZR1 351 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 HMG20BQ9P0W2 317 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 AMOTL2Q9Y2J4 779 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 PAXBP1Q9Y5B6 917 aa20.27■□□□□ 0.84
NPHP4-209ENST00000489180 UBE4AQ14139 1066 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 KLF18A0A0U1RQI7 1052 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 POTEB2H3BUK9 544 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 MFSD6Q6ZSS7 791 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 UBASH3AP57075 661 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 CCDC91Q7Z6B0 441 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 KIAA0586Q9BVV6 1533 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 SYKP43405 635 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 DNM1Q05193 864 aaKnown RBP20.26■□□□□ 0.83
NPHP4-209ENST00000489180 IDI1Q13907 227 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 MAATS1Q7Z4T9 603 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 TICAM2Q86XR7 235 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 IL16Q14005 1332 aa20.26■□□□□ 0.83
NPHP4-209ENST00000489180 SKILP12757 684 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 AFMP43652 599 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 BMS1Q14692 1282 aaKnown RBP20.25■□□□□ 0.83
NPHP4-209ENST00000489180 DNAJC25Q9H1X3 360 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 MYO1BO43795 1136 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 CWC25Q9NXE8 425 aaPredicted RBP20.25■□□□□ 0.83
NPHP4-209ENST00000489180 KIF14Q15058 1648 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 DNMBPQ6XZF7 1577 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 CHMP4BP1P59074 171 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 CALML4Q96GE6 196 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 ZSCAN16Q9H4T2 348 aaPredicted RBP20.25■□□□□ 0.83
NPHP4-209ENST00000489180 NSD2O96028 1365 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 NOP2P46087 812 aaKnown RBP20.25■□□□□ 0.83
NPHP4-209ENST00000489180 PRIM1P49642 420 aaKnown RBP20.25■□□□□ 0.83
NPHP4-209ENST00000489180 TTC12Q9H892 705 aaPredicted RBP20.25■□□□□ 0.83
NPHP4-209ENST00000489180 TCP11L1Q9NUJ3 509 aa20.25■□□□□ 0.83
NPHP4-209ENST00000489180 RBM8AQ9Y5S9 174 aaKnown RBP20.25■□□□□ 0.83
NPHP4-209ENST00000489180 CLCN1P35523 988 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 ZBTB9Q96C00 473 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 DACT1Q9NYF0 836 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 CHPF2Q9P2E5 772 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 N4BP3O15049 544 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 FAM107BQ9H098 131 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 NOL12Q9UGY1 213 aaKnown RBP eCLIP20.24■□□□□ 0.83
NPHP4-209ENST00000489180 V9GYY5 206 aaPredicted RBP20.24■□□□□ 0.83
NPHP4-209ENST00000489180 TTC21BQ7Z4L5 1316 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 GOLGA6L9A6NEM1 432 aa20.24■□□□□ 0.83
NPHP4-209ENST00000489180 TTF1Q15361 905 aaPredicted RBP20.24■□□□□ 0.83
NPHP4-209ENST00000489180 AOPEPQ8N6M6 819 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 C8orf58Q8NAV2 365 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 TSPY2A6NKD2 308 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 GCOM1H8Y6P7 765 aaPredicted RBP20.23■□□□□ 0.83
NPHP4-209ENST00000489180 MYZAPP0CAP1 466 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 DNAI1Q9UI46 699 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 CCDC171Q6TFL3 1326 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 UBA7P41226 1012 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 Q6ZUG5 572 aa20.23■□□□□ 0.83
NPHP4-209ENST00000489180 MRPL50Q8N5N7 158 aaKnown RBP20.23■□□□□ 0.83
NPHP4-209ENST00000489180 CUL5Q93034 780 aa20.22■□□□□ 0.83
NPHP4-209ENST00000489180 F13A1P00488 732 aa20.22■□□□□ 0.83
NPHP4-209ENST00000489180 MARCKSP29966 332 aaPredicted RBP20.22■□□□□ 0.83
NPHP4-209ENST00000489180 ANAPC15P60006 121 aa20.22■□□□□ 0.83
NPHP4-209ENST00000489180 TRIM47Q96LD4 638 aa20.22■□□□□ 0.83
NPHP4-209ENST00000489180 RRAGBQ5VZM2 374 aa20.22■□□□□ 0.83
NPHP4-209ENST00000489180 NAA15Q9BXJ9 866 aaKnown RBP20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 357.4 ms