RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 CTNNA3Q9UI47 895 aa13.32□□□□□ -0.28
SMPD4-218ENST00000482171 DTNBO60941 627 aa13.32□□□□□ -0.28
SMPD4-218ENST00000482171 CCT2P78371 535 aaKnown RBP13.32□□□□□ -0.28
SMPD4-218ENST00000482171 FAM89AQ96GI7 184 aa13.32□□□□□ -0.28
SMPD4-218ENST00000482171 ZSCAN31Q96LW9 406 aaPredicted RBP13.32□□□□□ -0.28
SMPD4-218ENST00000482171 SNX21Q969T3 373 aa13.32□□□□□ -0.28
SMPD4-218ENST00000482171 LIMCH1Q9UPQ0 1083 aa13.32□□□□□ -0.28
SMPD4-218ENST00000482171 U3KPZ7 1027 aaPredicted RBP13.32□□□□□ -0.28
SMPD4-218ENST00000482171 TOM1O60784 492 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 ME1P48163 572 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 NECAB1Q8N987 351 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 TMX3Q96JJ7 454 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 USP25Q9UHP3 1055 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 ADGRB3O60242 1522 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 ALKQ9UM73 1620 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 ARHGEF25Q86VW2 580 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 USP44Q9H0E7 712 aa13.31□□□□□ -0.28
SMPD4-218ENST00000482171 ABCC4O15439 1325 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 IGSF1Q8N6C5 1336 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 PRAMEF22A3QJZ6 481 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 ATP2B2Q01814 1243 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 TFCP2Q12800 502 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 NDUFB9Q9Y6M9 179 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 PCDH11XQ9BZA7 1347 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 PCDH11YQ9BZA8 1340 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 TIMM10P62072 90 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 KINO60870 393 aaKnown RBP13.3□□□□□ -0.28
SMPD4-218ENST00000482171 GIGYF1O75420 1035 aaPredicted RBP13.3□□□□□ -0.28
SMPD4-218ENST00000482171 LMTK3Q96Q04 1460 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 CCDC69A6NI79 296 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 TPM3P06753 285 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 CPA1P15085 419 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 ZSCAN23Q3MJ62 389 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 SUCLG2Q96I99 432 aa13.3□□□□□ -0.28
SMPD4-218ENST00000482171 RBM8AQ9Y5S9 174 aaKnown RBP13.3□□□□□ -0.28
SMPD4-218ENST00000482171 LETM1O95202 739 aaPredicted RBP13.29□□□□□ -0.28
SMPD4-218ENST00000482171 PROSER3Q2NL68 480 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 DZIP3Q86Y13 1208 aaKnown RBP13.29□□□□□ -0.28
SMPD4-218ENST00000482171 DNAJC10Q8IXB1 793 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 NAPBQ9H115 298 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 NPHP4O75161 1426 aaPredicted RBP13.29□□□□□ -0.28
SMPD4-218ENST00000482171 INO80Q9ULG1 1556 aaPredicted RBP13.29□□□□□ -0.28
SMPD4-218ENST00000482171 KIDINS220Q9ULH0 1771 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 CHMLP26374 656 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 GOLGA6L1Q8N7Z2 621 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 SPATA32Q96LK8 384 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 NMIQ13287 307 aaPredicted RBP13.29□□□□□ -0.28
SMPD4-218ENST00000482171 CCDC112Q8NEF3 446 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 ZNF594Q96JF6 807 aaPredicted RBP13.29□□□□□ -0.28
SMPD4-218ENST00000482171 ANKIB1Q9P2G1 1089 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 DIP2CQ9Y2E4 1556 aa13.29□□□□□ -0.28
SMPD4-218ENST00000482171 SLC4A8Q2Y0W8 1093 aa13.28□□□□□ -0.28
SMPD4-218ENST00000482171 TEX35Q5T0J7 233 aa13.28□□□□□ -0.28
SMPD4-218ENST00000482171 UBAC1Q9BSL1 405 aa13.28□□□□□ -0.28
SMPD4-218ENST00000482171 TFIP11Q9UBB9 837 aaKnown RBP13.28□□□□□ -0.28
SMPD4-218ENST00000482171 NIP7Q9Y221 180 aaKnown RBP eCLIP13.28□□□□□ -0.28
SMPD4-218ENST00000482171 KIAA0232Q92628 1395 aa13.28□□□□□ -0.28
SMPD4-218ENST00000482171 SLC5A1P13866 664 aa13.28□□□□□ -0.28
SMPD4-218ENST00000482171 ATP2B3Q16720 1220 aa13.28□□□□□ -0.28
SMPD4-218ENST00000482171 ZGPATQ8N5A5 531 aaKnown RBP13.28□□□□□ -0.28
SMPD4-218ENST00000482171 LAMC1P11047 1609 aa13.28□□□□□ -0.28
SMPD4-218ENST00000482171 CCDC66A2RUB6 948 aa13.27□□□□□ -0.28
SMPD4-218ENST00000482171 SPDYE4A6NLX3 237 aa13.27□□□□□ -0.28
SMPD4-218ENST00000482171 PRIM1P49642 420 aaKnown RBP13.27□□□□□ -0.28
SMPD4-218ENST00000482171 MAP3K12Q12852 859 aa13.27□□□□□ -0.28
SMPD4-218ENST00000482171 ZNF830Q96NB3 372 aaPredicted RBP13.27□□□□□ -0.28
SMPD4-218ENST00000482171 CCDC192P0DO97 292 aa13.27□□□□□ -0.28
SMPD4-218ENST00000482171 PHKG2P15735 406 aa13.27□□□□□ -0.28
SMPD4-218ENST00000482171 CAVIN4Q5BKX8 364 aa13.27□□□□□ -0.28
SMPD4-218ENST00000482171 MNS1Q8NEH6 495 aa13.27□□□□□ -0.28
SMPD4-218ENST00000482171 ZNF219Q9P2Y4 722 aaPredicted RBP13.27□□□□□ -0.28
SMPD4-218ENST00000482171 RTL1A6NKG5 1358 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 DYNC1I1O14576 645 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 ZNF213O14771 459 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 METTL22Q9BUU2 404 aaPredicted RBP13.27□□□□□ -0.29
SMPD4-218ENST00000482171 USP26Q9BXU7 913 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 BABAM1Q9NWV8 329 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 HOXB7P09629 217 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 ZNF853P0CG23 659 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 XBP1P17861 261 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 CAMK4Q16566 473 aa13.27□□□□□ -0.29
SMPD4-218ENST00000482171 OFD1O75665 1012 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 GJB2P29033 226 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 IKQ13123 557 aaPredicted RBP13.26□□□□□ -0.29
SMPD4-218ENST00000482171 CCDC144CPQ8IYA2 1237 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 TRIM22Q8IYM9 498 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 BRF1Q92994 677 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 IL15P40933 162 aaPredicted RBP13.26□□□□□ -0.29
SMPD4-218ENST00000482171 SLC3A2P08195 630 aaKnown RBP13.26□□□□□ -0.29
SMPD4-218ENST00000482171 PPP4R3BQ5MIZ7 849 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 ZNF396Q96N95 335 aaPredicted RBP13.26□□□□□ -0.29
SMPD4-218ENST00000482171 NEK1Q96PY6 1258 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 DBNDD2Q9BQY9 259 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 TNMDQ9H2S6 317 aa13.26□□□□□ -0.29
SMPD4-218ENST00000482171 IRS4O14654 1257 aaPredicted RBP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 RBM25P49756 843 aaKnown RBP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 TULP4Q9NRJ4 1543 aa13.25□□□□□ -0.29
SMPD4-218ENST00000482171 GSPT1P15170 499 aaKnown RBP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 CHST3Q7LGC8 479 aa13.25□□□□□ -0.29
SMPD4-218ENST00000482171 ERICH4A6NGS2 130 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms