RNA–Protein interactions for RNA: ENST00000477334.1

RBM39-231, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 949 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-231	ENST00000477334	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	7.81	□□□□□ -1.16	1e-6	■□□□□ 8.1
RBM39-231	ENST00000477334	NEURL1B	A8MQ27	555 aa		7.8	□□□□□ -1.16
RBM39-231	ENST00000477334	AMPD1	P23109	780 aa		7.8	□□□□□ -1.16
RBM39-231	ENST00000477334	SAP130	Q9H0E3	1048 aa		7.8	□□□□□ -1.16
RBM39-231	ENST00000477334	QTRT2	Q9H974	415 aa	Known RBP	7.8	□□□□□ -1.16
RBM39-231	ENST00000477334	AVEN	Q9NQS1	362 aa	Predicted RBP	7.8	□□□□□ -1.16
RBM39-231	ENST00000477334	GPC6	Q9Y625	555 aa	Predicted RBP	7.8	□□□□□ -1.16
RBM39-231	ENST00000477334	EFS	O43281	561 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	HOXB4	P17483	251 aa	Predicted RBP	7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	ADH6	P28332	368 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	SERPINB4	P48594	390 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	KCNA1	Q09470	495 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	LAMC2	Q13753	1193 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	PLA2G4E	Q3MJ16	856 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	TXNDC2	Q86VQ3	553 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	COL26A1	Q96A83	441 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	MTMR7	Q9Y216	660 aa		7.79	□□□□□ -1.16
RBM39-231	ENST00000477334	ABL1	P00519	1130 aa		7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	COX20	Q5RI15	118 aa		7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	ZNF468	Q5VIY5	522 aa	Predicted RBP	7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	CCER1	Q8TC90	406 aa	Predicted RBP	7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	RHPN1	Q8TCX5	695 aa		7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	GTF3C2	Q8WUA4	911 aa	Predicted RBP	7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	MARK1	Q9P0L2	795 aa		7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	KLF15	Q9UIH9	416 aa		7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	IVNS1ABP	Q9Y6Y0	642 aa		7.78	□□□□□ -1.16
RBM39-231	ENST00000477334	MTMR3	Q13615	1198 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	RTN1	Q16799	776 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	C1orf53	Q5VUE5	145 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	C16orf46	Q6P387	395 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	LRRC69	Q6ZNQ3	347 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	ALYREF	Q86V81	257 aa	Known RBP	7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	C7orf43	Q8WVR3	580 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	BTBD6	Q96KE9	485 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	ANO2	Q9NQ90	1003 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	STRN4	Q9NRL3	753 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	KLK14	Q9P0G3	267 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	LRFN2	Q9ULH4	789 aa		7.77	□□□□□ -1.17
RBM39-231	ENST00000477334	ITGB2	P05107	769 aa		7.76	□□□□□ -1.17
RBM39-231	ENST00000477334	DGKG	P49619	791 aa		7.76	□□□□□ -1.17
RBM39-231	ENST00000477334	ZNF211	Q13398	564 aa	Predicted RBP	7.76	□□□□□ -1.17
RBM39-231	ENST00000477334	DGKZ	Q13574	1117 aa		7.76	□□□□□ -1.17
RBM39-231	ENST00000477334	LINC00114	Q6XXX2	140 aa		7.76	□□□□□ -1.17
RBM39-231	ENST00000477334	FCHSD1	Q86WN1	690 aa		7.76	□□□□□ -1.17
RBM39-231	ENST00000477334	PRR12	Q9ULL5	1215 aa		7.76	□□□□□ -1.17
RBM39-231	ENST00000477334	PIK3R2	O00459	728 aa		7.75	□□□□□ -1.17
RBM39-231	ENST00000477334	MSTN	O14793	375 aa		7.75	□□□□□ -1.17
RBM39-231	ENST00000477334	CHSY3	Q70JA7	882 aa		7.75	□□□□□ -1.17
RBM39-231	ENST00000477334	MYO19	Q96H55	970 aa		7.75	□□□□□ -1.17
RBM39-231	ENST00000477334	HSH2D	Q96JZ2	352 aa		7.75	□□□□□ -1.17
RBM39-231	ENST00000477334	NEUROD4	Q9HD90	331 aa		7.75	□□□□□ -1.17
RBM39-231	ENST00000477334	GNE	Q9Y223	722 aa	Known RBP	7.75	□□□□□ -1.17
RBM39-231	ENST00000477334	PATL2	C9JE40	543 aa	Known RBP	7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	GNB5	O14775	395 aa		7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	COL8A1	P27658	744 aa		7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	PCBP4	P57723	403 aa	Known RBP	7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	TRIM26	Q12899	539 aa	Predicted RBP	7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	C11orf91	Q3C1V1	193 aa		7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	ZNF280C	Q8ND82	737 aa		7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	SPOCK3	Q9BQ16	436 aa		7.74	□□□□□ -1.17
RBM39-231	ENST00000477334	ZBTB7C	A1YPR0	619 aa		7.73	□□□□□ -1.17
RBM39-231	ENST00000477334	HELQ	Q8TDG4	1101 aa		7.73	□□□□□ -1.17
RBM39-231	ENST00000477334	SUSD3	Q96L08	255 aa		7.73	□□□□□ -1.17
RBM39-231	ENST00000477334	KRBA1	A5PL33	1030 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334		H3BRB1	525 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	TNFRSF10B	O14763	440 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	PROC	P04070	461 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	GRIN2C	Q14957	1233 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	SUV39H2	Q9H5I1	410 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	TUT1	Q9H6E5	874 aa	Known RBP	7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	ANKIB1	Q9P2G1	1089 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	BCS1L	Q9Y276	419 aa		7.72	□□□□□ -1.17
RBM39-231	ENST00000477334	BRD2	P25440	801 aa	Known RBP	7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	FKBP4	Q02790	459 aa	Known RBP eCLIP	7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	FAM26D	Q5JW98	314 aa		7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	SYT9	Q86SS6	491 aa		7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	IFT43	Q96FT9	208 aa		7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	GZF1	Q9H116	711 aa	Predicted RBP	7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	NOP53	Q9NZM5	478 aa	Known RBP	7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	STIM2	Q9P246	746 aa		7.71	□□□□□ -1.18
RBM39-231	ENST00000477334	ELOA3C	A0A087WX78	387 aa	Predicted RBP	7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	SOWAHD	A6NJG2	315 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	ELOA3D	A6NLF2	546 aa	Predicted RBP	7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	ICMT	O60725	284 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	SIN3B	O75182	1162 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	MPST	P25325	297 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	SFSWAP	Q12872	951 aa	Known RBP	7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	SF3B2	Q13435	895 aa	Known RBP	7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	HIF1A	Q16665	826 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	ELOA3B	Q3SY89	546 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	GLYCTK	Q8IVS8	523 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	ETFBKMT	Q8IXQ9	262 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	ELOA3	Q8NG57	546 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	MDFI	Q99750	246 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	EGFL7	Q9UHF1	273 aa		7.7	□□□□□ -1.18
RBM39-231	ENST00000477334	TGFBR3L	H3BV60	316 aa		7.69	□□□□□ -1.18
RBM39-231	ENST00000477334	ZBTB39	O15060	712 aa		7.69	□□□□□ -1.18
RBM39-231	ENST00000477334	TYRO3	Q06418	890 aa		7.69	□□□□□ -1.18
RBM39-231	ENST00000477334	CEP63	Q96MT8	703 aa		7.69	□□□□□ -1.18
RBM39-231	ENST00000477334	BRD7	Q9NPI1	651 aa		7.69	□□□□□ -1.18

Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms