RNA–Protein interactions for RNA: ENST00000466508.5

PPP1R3F-203, Transcript of protein phosphatase 1 regulatory subunit 3F, humanhuman

TSL 2 BASIC

Gene PPP1R3F, Length 1,885 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP1R3F-203ENST00000466508 SMARCC1Q92922 1105 aaPredicted RBP26.01■■□□□ 1.75
PPP1R3F-203ENST00000466508 TRIM28Q13263 835 aaKnown RBP26■■□□□ 1.75
PPP1R3F-203ENST00000466508 ATP6V1AP38606 617 aa26■■□□□ 1.75
PPP1R3F-203ENST00000466508 NUP98P52948 1817 aa26■■□□□ 1.75
PPP1R3F-203ENST00000466508 COL5A3P25940 1745 aaPredicted RBP25.99■■□□□ 1.75
PPP1R3F-203ENST00000466508 MYH14Q7Z406 1995 aaKnown RBP25.98■■□□□ 1.75
PPP1R3F-203ENST00000466508 TSHZ3Q63HK5 1081 aa25.98■■□□□ 1.75
PPP1R3F-203ENST00000466508 GIGYF2Q6Y7W6 1299 aaKnown RBP25.98■■□□□ 1.75
PPP1R3F-203ENST00000466508 BRWD3Q6RI45 1802 aa25.98■■□□□ 1.75
PPP1R3F-203ENST00000466508 C22orf23Q9BZE7 217 aa25.98■■□□□ 1.75
PPP1R3F-203ENST00000466508 NHSQ6T4R5 1651 aa25.97■■□□□ 1.75
PPP1R3F-203ENST00000466508 EIF5BO60841 1220 aaKnown RBP25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 G3BP1Q13283 466 aaKnown RBP eCLIP25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 NUTM1Q86Y26 1132 aa25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 CLASRPQ8N2M8 674 aaKnown RBP25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 ARXQ96QS3 562 aa25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 COPRSQ9NQ92 184 aa25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 CCDC87Q9NVE4 849 aa25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 EP400Q96L91 3159 aa25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 FOXO4P98177 505 aa25.96■■□□□ 1.75
PPP1R3F-203ENST00000466508 BTAF1O14981 1849 aa25.95■■□□□ 1.75
PPP1R3F-203ENST00000466508 AK9Q5TCS8 1911 aa25.95■■□□□ 1.74
PPP1R3F-203ENST00000466508 CRKLP46109 303 aaKnown RBP25.95■■□□□ 1.74
PPP1R3F-203ENST00000466508 RFX5P48382 616 aaPredicted RBP25.95■■□□□ 1.74
PPP1R3F-203ENST00000466508 ITPK1Q13572 414 aa25.95■■□□□ 1.74
PPP1R3F-203ENST00000466508 HSP90AB3PQ58FF7 597 aa25.95■■□□□ 1.74
PPP1R3F-203ENST00000466508 INTS5Q6P9B9 1019 aaKnown RBP25.95■■□□□ 1.74
PPP1R3F-203ENST00000466508 KRT27Q7Z3Y8 459 aa25.95■■□□□ 1.74
PPP1R3F-203ENST00000466508 USP42Q9H9J4 1324 aaKnown RBP25.94■■□□□ 1.74
PPP1R3F-203ENST00000466508 ERVV-1B6SEH8 477 aa25.94■■□□□ 1.74
PPP1R3F-203ENST00000466508 EIF5P55010 431 aaKnown RBP25.94■■□□□ 1.74
PPP1R3F-203ENST00000466508 HLFQ16534 295 aa25.94■■□□□ 1.74
PPP1R3F-203ENST00000466508 CASC1Q6TDU7 716 aa25.94■■□□□ 1.74
PPP1R3F-203ENST00000466508 SASH1O94885 1247 aa25.93■■□□□ 1.74
PPP1R3F-203ENST00000466508 PTPN12Q05209 780 aaKnown RBP25.93■■□□□ 1.74
PPP1R3F-203ENST00000466508 RTL5Q5HYW3 569 aaPredicted RBP25.93■■□□□ 1.74
PPP1R3F-203ENST00000466508 LMBR1LQ6UX01 489 aa25.93■■□□□ 1.74
PPP1R3F-203ENST00000466508 DZIP3Q86Y13 1208 aaKnown RBP25.93■■□□□ 1.74
PPP1R3F-203ENST00000466508 KLHDC4Q8TBB5 520 aa25.93■■□□□ 1.74
PPP1R3F-203ENST00000466508 SIL1Q9H173 461 aa25.93■■□□□ 1.74
PPP1R3F-203ENST00000466508 PI4K2BQ8TCG2 481 aa25.91■■□□□ 1.74
PPP1R3F-203ENST00000466508 SBF2Q86WG5 1849 aa25.91■■□□□ 1.74
PPP1R3F-203ENST00000466508 PCCAP05165 728 aaPredicted RBP25.91■■□□□ 1.74
PPP1R3F-203ENST00000466508 RBM25P49756 843 aaKnown RBP25.91■■□□□ 1.74
PPP1R3F-203ENST00000466508 TTC41PQ6P2S7 1318 aa25.91■■□□□ 1.74
PPP1R3F-203ENST00000466508 ERICH6Q7L0X2 663 aa25.89■■□□□ 1.74
PPP1R3F-203ENST00000466508 ZBTB38Q8NAP3 1195 aaPredicted RBP25.89■■□□□ 1.74
PPP1R3F-203ENST00000466508 TBC1D2BQ9UPU7 963 aa25.89■■□□□ 1.74
PPP1R3F-203ENST00000466508 NLRP10Q86W26 655 aa25.89■■□□□ 1.73
PPP1R3F-203ENST00000466508 MYH3P11055 1940 aa25.88■■□□□ 1.73
PPP1R3F-203ENST00000466508 IFIT2P09913 472 aaKnown RBP25.88■■□□□ 1.73
PPP1R3F-203ENST00000466508 TRIM6-TRIM34B2RNG4 842 aa25.87■■□□□ 1.73
PPP1R3F-203ENST00000466508 AACSQ86V21 672 aa25.87■■□□□ 1.73
PPP1R3F-203ENST00000466508 GPATCH3Q96I76 525 aa25.87■■□□□ 1.73
PPP1R3F-203ENST00000466508 CHMP3Q9Y3E7 222 aa25.87■■□□□ 1.73
PPP1R3F-203ENST00000466508 GPTP24298 496 aa25.87■■□□□ 1.73
PPP1R3F-203ENST00000466508 PLA2G12BQ9BX93 195 aa25.87■■□□□ 1.73
PPP1R3F-203ENST00000466508 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.87■■□□□ 1.73
PPP1R3F-203ENST00000466508 PTF1AQ7RTS3 328 aa25.86■■□□□ 1.73
PPP1R3F-203ENST00000466508 EAF2Q96CJ1 260 aaPredicted RBP25.86■■□□□ 1.73
PPP1R3F-203ENST00000466508 CDHR2Q9BYE9 1310 aa25.86■■□□□ 1.73
PPP1R3F-203ENST00000466508 GLRX3O76003 335 aaKnown RBP25.85■■□□□ 1.73
PPP1R3F-203ENST00000466508 CCDC125Q86Z20 511 aa25.85■■□□□ 1.73
PPP1R3F-203ENST00000466508 RILPL2Q969X0 211 aa25.85■■□□□ 1.73
PPP1R3F-203ENST00000466508 FAM89AQ96GI7 184 aa25.85■■□□□ 1.73
PPP1R3F-203ENST00000466508 ECHDC1Q9NTX5 307 aa25.85■■□□□ 1.73
PPP1R3F-203ENST00000466508 DAXXQ9UER7 740 aaPredicted RBP25.85■■□□□ 1.73
PPP1R3F-203ENST00000466508 ERC2O15083 957 aa25.85■■□□□ 1.73
PPP1R3F-203ENST00000466508 BCORQ6W2J9 1755 aa25.84■■□□□ 1.73
PPP1R3F-203ENST00000466508 FAM182BQ5T319 152 aa25.84■■□□□ 1.73
PPP1R3F-203ENST00000466508 LY75O60449 1722 aa25.83■■□□□ 1.73
PPP1R3F-203ENST00000466508 ZNF34Q8IZ26 560 aa25.83■■□□□ 1.73
PPP1R3F-203ENST00000466508 LINC00116Q8NCU8 138 aa25.83■■□□□ 1.72
PPP1R3F-203ENST00000466508 UBN2Q6ZU65 1347 aa25.82■■□□□ 1.72
PPP1R3F-203ENST00000466508 BECN1Q14457 450 aa25.82■■□□□ 1.72
PPP1R3F-203ENST00000466508 CNTNAP4Q9C0A0 1308 aa25.81■■□□□ 1.72
PPP1R3F-203ENST00000466508 CAMTA2O94983 1202 aa25.81■■□□□ 1.72
PPP1R3F-203ENST00000466508 REC8O95072 547 aa25.81■■□□□ 1.72
PPP1R3F-203ENST00000466508 CHMLP26374 656 aa25.81■■□□□ 1.72
PPP1R3F-203ENST00000466508 CNTROBQ8N137 903 aa25.81■■□□□ 1.72
PPP1R3F-203ENST00000466508 SLC4A3P48751 1232 aa25.8■■□□□ 1.72
PPP1R3F-203ENST00000466508 TFCP2Q12800 502 aa25.8■■□□□ 1.72
PPP1R3F-203ENST00000466508 CCDC8Q9H0W5 538 aaPredicted RBP25.8■■□□□ 1.72
PPP1R3F-203ENST00000466508 TRMT112Q9UI30 125 aaKnown RBP25.8■■□□□ 1.72
PPP1R3F-203ENST00000466508 CSF1RP07333 972 aa25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 TAF1LQ8IZX4 1826 aa25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 CCDC57Q2TAC2 916 aa25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 TNNI3KQ59H18 835 aa25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 ATG9AQ7Z3C6 839 aa25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 USP26Q9BXU7 913 aa25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 TLR7Q9NYK1 1049 aaKnown RBP25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 FPGT-TNNI3KV9GXZ4 949 aa25.79■■□□□ 1.72
PPP1R3F-203ENST00000466508 CIAO1O76071 339 aa25.78■■□□□ 1.72
PPP1R3F-203ENST00000466508 MAP4K4O95819 1239 aaPredicted RBP25.78■■□□□ 1.72
PPP1R3F-203ENST00000466508 IL15P40933 162 aaPredicted RBP25.78■■□□□ 1.72
PPP1R3F-203ENST00000466508 SYNE4Q8N205 404 aa25.78■■□□□ 1.72
PPP1R3F-203ENST00000466508 ESYT1Q9BSJ8 1104 aa25.78■■□□□ 1.72
PPP1R3F-203ENST00000466508 SF3B2Q13435 895 aaKnown RBP25.77■■□□□ 1.72
PPP1R3F-203ENST00000466508 EYA2O00167 538 aa25.77■■□□□ 1.72
PPP1R3F-203ENST00000466508 KCNQ4P56696 695 aa25.77■■□□□ 1.72
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms