RNA–Protein interactions for RNA: ENST00000460569.1

UPF2-204, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF2, Length 640 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-204ENST00000460569 DDR1Q08345 913 aa12.86□□□□□ -0.35
UPF2-204ENST00000460569 PDE3AQ14432 1141 aa12.86□□□□□ -0.35
UPF2-204ENST00000460569 INTS3Q68E01 1043 aaKnown RBP12.86□□□□□ -0.35
UPF2-204ENST00000460569 ITPRIPQ8IWB1 547 aa12.86□□□□□ -0.35
UPF2-204ENST00000460569 CCDC191Q8NCU4 936 aa12.86□□□□□ -0.35
UPF2-204ENST00000460569 ATF5Q9Y2D1 282 aaPredicted RBP12.86□□□□□ -0.35
UPF2-204ENST00000460569 DDX60Q8IY21 1712 aaKnown RBP12.85□□□□□ -0.35
UPF2-204ENST00000460569 IBTKQ9P2D0 1353 aaPredicted RBP12.85□□□□□ -0.35
UPF2-204ENST00000460569 NPHP1O15259 732 aa12.85□□□□□ -0.35
UPF2-204ENST00000460569 TM4SF1P30408 202 aa12.85□□□□□ -0.35
UPF2-204ENST00000460569 TRIM28Q13263 835 aaKnown RBP12.85□□□□□ -0.35
UPF2-204ENST00000460569 GCKRQ14397 625 aa12.85□□□□□ -0.35
UPF2-204ENST00000460569 SUSD4Q5VX71 490 aa12.85□□□□□ -0.35
UPF2-204ENST00000460569 PPP1R42Q7Z4L9 355 aa12.85□□□□□ -0.35
UPF2-204ENST00000460569 NBPF5PQ86XG9 351 aaPredicted RBP12.85□□□□□ -0.35
UPF2-204ENST00000460569 PARP3Q9Y6F1 533 aa12.85□□□□□ -0.35
UPF2-204ENST00000460569 MYH3P11055 1940 aa12.84□□□□□ -0.35
UPF2-204ENST00000460569 POLRMTO00411 1230 aaKnown RBP12.84□□□□□ -0.35
UPF2-204ENST00000460569 NTSR2O95665 410 aa12.84□□□□□ -0.35
UPF2-204ENST00000460569 POLD1P28340 1107 aa12.84□□□□□ -0.35
UPF2-204ENST00000460569 UTP14AQ9BVJ6 771 aaKnown RBP12.84□□□□□ -0.35
UPF2-204ENST00000460569 NYXQ9GZU5 481 aa12.84□□□□□ -0.35
UPF2-204ENST00000460569 TRMT112Q9UI30 125 aaKnown RBP12.84□□□□□ -0.35
UPF2-204ENST00000460569 COG6Q9Y2V7 657 aa12.84□□□□□ -0.35
UPF2-204ENST00000460569 TNRC6CQ9HCJ0 1690 aaKnown RBP12.83□□□□□ -0.35
UPF2-204ENST00000460569 ANKRD31Q8N7Z5 1873 aa12.83□□□□□ -0.36
UPF2-204ENST00000460569 SERPINB2P05120 415 aa12.83□□□□□ -0.36
UPF2-204ENST00000460569 GTF2E1P29083 439 aaPredicted RBP12.83□□□□□ -0.36
UPF2-204ENST00000460569 MVPQ14764 893 aaKnown RBP12.83□□□□□ -0.36
UPF2-204ENST00000460569 RTL5Q5HYW3 569 aaPredicted RBP12.83□□□□□ -0.36
UPF2-204ENST00000460569 UBE3BQ7Z3V4 1068 aa12.83□□□□□ -0.36
UPF2-204ENST00000460569 CNBD1Q8NA66 436 aa12.83□□□□□ -0.36
UPF2-204ENST00000460569 C9orf78Q9NZ63 289 aaPredicted RBP12.83□□□□□ -0.36
UPF2-204ENST00000460569 ABCC12Q96J65 1359 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 GRM8O00222 908 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 PCCAP05165 728 aaPredicted RBP12.82□□□□□ -0.36
UPF2-204ENST00000460569 IRX6P78412 446 aaPredicted RBP12.82□□□□□ -0.36
UPF2-204ENST00000460569 TPTE2Q6XPS3 522 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 NUTM1Q86Y26 1132 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 ZBTB38Q8NAP3 1195 aaPredicted RBP12.82□□□□□ -0.36
UPF2-204ENST00000460569 JARID2Q92833 1246 aaPredicted RBP12.82□□□□□ -0.36
UPF2-204ENST00000460569 FAM89AQ96GI7 184 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 MEIS3Q99687 375 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 SPON1Q9HCB6 807 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 DDX19BQ9UMR2 479 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 SH3TC1Q8TE82 1336 aa12.82□□□□□ -0.36
UPF2-204ENST00000460569 ST5P78524 1137 aa12.81□□□□□ -0.36
UPF2-204ENST00000460569 ERFEQ4G0M1 354 aa12.81□□□□□ -0.36
UPF2-204ENST00000460569 PRR5LQ6MZQ0 368 aa12.81□□□□□ -0.36
UPF2-204ENST00000460569 CCDC24Q8N4L8 307 aa12.81□□□□□ -0.36
UPF2-204ENST00000460569 CRBNQ96SW2 442 aa12.81□□□□□ -0.36
UPF2-204ENST00000460569 KIF13BQ9NQT8 1826 aa12.81□□□□□ -0.36
UPF2-204ENST00000460569 COL11A2P13942 1736 aaPredicted RBP12.8□□□□□ -0.36
UPF2-204ENST00000460569 H7C1W4 665 aa12.8□□□□□ -0.36
UPF2-204ENST00000460569 GNAI3P08754 354 aa12.8□□□□□ -0.36
UPF2-204ENST00000460569 NBPF7P0C2Y1 421 aaPredicted RBP12.8□□□□□ -0.36
UPF2-204ENST00000460569 UBTFL1P0CB47 393 aaPredicted RBP12.8□□□□□ -0.36
UPF2-204ENST00000460569 SYNE4Q8N205 404 aa12.8□□□□□ -0.36
UPF2-204ENST00000460569 USP44Q9H0E7 712 aa12.8□□□□□ -0.36
UPF2-204ENST00000460569 CDHR2Q9BYE9 1310 aa12.8□□□□□ -0.36
UPF2-204ENST00000460569 C10orf71Q711Q0 1435 aa12.79□□□□□ -0.36
UPF2-204ENST00000460569 IRS4O14654 1257 aaPredicted RBP12.79□□□□□ -0.36
UPF2-204ENST00000460569 NEFLP07196 543 aa12.79□□□□□ -0.36
UPF2-204ENST00000460569 HCLS1P14317 486 aaPredicted RBP12.79□□□□□ -0.36
UPF2-204ENST00000460569 PTGER2P43116 358 aa12.79□□□□□ -0.36
UPF2-204ENST00000460569 CASP7P55210 303 aa12.79□□□□□ -0.36
UPF2-204ENST00000460569 SGIP1Q9BQI5 828 aa12.79□□□□□ -0.36
UPF2-204ENST00000460569 UTYO14607 1347 aa12.79□□□□□ -0.36
UPF2-204ENST00000460569 RIC1Q4ADV7 1423 aa12.79□□□□□ -0.36
UPF2-204ENST00000460569 LRP5O75197 1615 aa12.78□□□□□ -0.36
UPF2-204ENST00000460569 SUCLG2Q96I99 432 aa12.78□□□□□ -0.36
UPF2-204ENST00000460569 CHMP4BQ9H444 224 aaKnown RBP12.78□□□□□ -0.36
UPF2-204ENST00000460569 DLEC1Q9Y238 1755 aa12.77□□□□□ -0.36
UPF2-204ENST00000460569 CACNA1SQ13698 1873 aa12.77□□□□□ -0.37
UPF2-204ENST00000460569 ZBTB7BO15156 539 aaPredicted RBP12.77□□□□□ -0.37
UPF2-204ENST00000460569 HSP90B1P14625 803 aaKnown RBP12.77□□□□□ -0.37
UPF2-204ENST00000460569 KLHL34Q8N239 644 aa12.77□□□□□ -0.37
UPF2-204ENST00000460569 C1orf115Q9H7X2 142 aa12.77□□□□□ -0.37
UPF2-204ENST00000460569 HDAC5Q9UQL6 1122 aa12.77□□□□□ -0.37
UPF2-204ENST00000460569 LRRFIP2Q9Y608 721 aaKnown RBP12.77□□□□□ -0.37
UPF2-204ENST00000460569 KIAA1551Q9HCM1 1747 aa12.76□□□□□ -0.37
UPF2-204ENST00000460569 SPEF2Q9C093 1822 aa12.76□□□□□ -0.37
UPF2-204ENST00000460569 PDE8AO60658 829 aa12.76□□□□□ -0.37
UPF2-204ENST00000460569 GNAI2P04899 355 aa12.76□□□□□ -0.37
UPF2-204ENST00000460569 SLC10A5Q5PT55 438 aa12.76□□□□□ -0.37
UPF2-204ENST00000460569 EXOC6Q8TAG9 804 aa12.76□□□□□ -0.37
UPF2-204ENST00000460569 CTSWP56202 376 aa12.75□□□□□ -0.37
UPF2-204ENST00000460569 EPHA10Q5JZY3 1008 aa12.75□□□□□ -0.37
UPF2-204ENST00000460569 NLRP3Q96P20 1036 aa12.75□□□□□ -0.37
UPF2-204ENST00000460569 BRIP1Q9BX63 1249 aa12.75□□□□□ -0.37
UPF2-204ENST00000460569 PLA2G12BQ9BX93 195 aa12.75□□□□□ -0.37
UPF2-204ENST00000460569 BICC1Q9H694 974 aaKnown RBP12.75□□□□□ -0.37
UPF2-204ENST00000460569 ZBTB40Q9NUA8 1239 aa12.75□□□□□ -0.37
UPF2-204ENST00000460569 PPP1R1BQ9UD71 204 aaPredicted RBP12.75□□□□□ -0.37
UPF2-204ENST00000460569 TAF1P21675 1872 aa12.74□□□□□ -0.37
UPF2-204ENST00000460569 PDE6BP35913 854 aa12.74□□□□□ -0.37
UPF2-204ENST00000460569 FOXO4P98177 505 aa12.74□□□□□ -0.37
UPF2-204ENST00000460569 C3orf67Q6ZVT6 689 aa12.74□□□□□ -0.37
UPF2-204ENST00000460569 KAZALD1Q96I82 304 aa12.74□□□□□ -0.37
UPF2-204ENST00000460569 CCDC85AQ96PX6 553 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms