RNA–Protein interactions for RNA: ENST00000454428.5

UBE2D4-209, Transcript of ubiquitin conjugating enzyme E2 D4 (putative), humanhuman

TSL 3

Gene UBE2D4, Length 288 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D4-209ENST00000454428 NPC1L1Q9UHC9 1359 aa23.09■■□□□ 1.29
UBE2D4-209ENST00000454428 MCM10Q7L590 875 aa23.08■■□□□ 1.29
UBE2D4-209ENST00000454428 GPR101Q96P66 508 aaPredicted RBP23.08■■□□□ 1.29
UBE2D4-209ENST00000454428 LAMB4A4D0S4 1761 aa23.08■■□□□ 1.29
UBE2D4-209ENST00000454428 NUP98P52948 1817 aa23.08■■□□□ 1.28
UBE2D4-209ENST00000454428 CCDC85CA6NKD9 419 aa23.07■■□□□ 1.28
UBE2D4-209ENST00000454428 EIF6P56537 245 aaKnown RBP23.07■■□□□ 1.28
UBE2D4-209ENST00000454428 NUTM1Q86Y26 1132 aa23.07■■□□□ 1.28
UBE2D4-209ENST00000454428 MLLT1Q03111 559 aaPredicted RBP23.06■■□□□ 1.28
UBE2D4-209ENST00000454428 TSKSQ9UJT2 592 aa23.06■■□□□ 1.28
UBE2D4-209ENST00000454428 TLL2Q9Y6L7 1015 aa23.06■■□□□ 1.28
UBE2D4-209ENST00000454428 LMOD1P29536 600 aaPredicted RBP23.05■■□□□ 1.28
UBE2D4-209ENST00000454428 HOXA10P31260 410 aaPredicted RBP23.05■■□□□ 1.28
UBE2D4-209ENST00000454428 ECE1P42892 770 aa23.05■■□□□ 1.28
UBE2D4-209ENST00000454428 CNGB1Q14028 1251 aaPredicted RBP23.05■■□□□ 1.28
UBE2D4-209ENST00000454428 DCTN1Q14203 1278 aa23.05■■□□□ 1.28
UBE2D4-209ENST00000454428 RIC1Q4ADV7 1423 aa23.05■■□□□ 1.28
UBE2D4-209ENST00000454428 AOC2O75106 756 aa23.04■■□□□ 1.28
UBE2D4-209ENST00000454428 GRM1Q13255 1194 aa23.04■■□□□ 1.28
UBE2D4-209ENST00000454428 CC2D2BQ6DHV5 1058 aa23.04■■□□□ 1.28
UBE2D4-209ENST00000454428 PAXIP1Q6ZW49 1069 aaPredicted RBP23.04■■□□□ 1.28
UBE2D4-209ENST00000454428 USP50Q70EL3 339 aaPredicted RBP23.04■■□□□ 1.28
UBE2D4-209ENST00000454428 GTF2E1P29083 439 aaPredicted RBP23.03■■□□□ 1.28
UBE2D4-209ENST00000454428 LARGE2Q8N3Y3 721 aa23.02■■□□□ 1.28
UBE2D4-209ENST00000454428 UBN2Q6ZU65 1347 aa23.02■■□□□ 1.28
UBE2D4-209ENST00000454428 C3orf67Q6ZVT6 689 aa23.01■■□□□ 1.27
UBE2D4-209ENST00000454428 BEGAINQ9BUH8 593 aa23.01■■□□□ 1.27
UBE2D4-209ENST00000454428 NYXQ9GZU5 481 aa23.01■■□□□ 1.27
UBE2D4-209ENST00000454428 CASP8AP2Q9UKL3 1982 aa23.01■■□□□ 1.27
UBE2D4-209ENST00000454428 ERVV-1B6SEH8 477 aa23■■□□□ 1.27
UBE2D4-209ENST00000454428 MAP2K2P36507 400 aa23■■□□□ 1.27
UBE2D4-209ENST00000454428 SAPCD2Q86UD0 394 aa23■■□□□ 1.27
UBE2D4-209ENST00000454428 RTF1Q92541 710 aaKnown RBP23■■□□□ 1.27
UBE2D4-209ENST00000454428 MIS18AQ9NYP9 233 aa23■■□□□ 1.27
UBE2D4-209ENST00000454428 TTLL7Q6ZT98 887 aa22.99■■□□□ 1.27
UBE2D4-209ENST00000454428 RPGRQ92834 1020 aaKnown RBP22.99■■□□□ 1.27
UBE2D4-209ENST00000454428 GPRC5DQ9NZD1 345 aa22.99■■□□□ 1.27
UBE2D4-209ENST00000454428 MAP3K15Q6ZN16 1313 aa22.99■■□□□ 1.27
UBE2D4-209ENST00000454428 IBTKQ9P2D0 1353 aaPredicted RBP22.99■■□□□ 1.27
UBE2D4-209ENST00000454428 KDM3BQ7LBC6 1761 aa22.99■■□□□ 1.27
UBE2D4-209ENST00000454428 GRIPAP1Q4V328 841 aa22.98■■□□□ 1.27
UBE2D4-209ENST00000454428 NGEFQ8N5V2 710 aa22.98■■□□□ 1.27
UBE2D4-209ENST00000454428 CRAMP1Q96RY5 1269 aa22.98■■□□□ 1.27
UBE2D4-209ENST00000454428 TCERG1O14776 1098 aaKnown RBP22.97■■□□□ 1.27
UBE2D4-209ENST00000454428 PPEF1O14829 653 aaPredicted RBP22.97■■□□□ 1.27
UBE2D4-209ENST00000454428 GPTP24298 496 aa22.97■■□□□ 1.27
UBE2D4-209ENST00000454428 SUSD4Q5VX71 490 aa22.97■■□□□ 1.27
UBE2D4-209ENST00000454428 MCOLN1Q9GZU1 580 aa22.97■■□□□ 1.27
UBE2D4-209ENST00000454428 ADARB2Q9NS39 739 aaKnown RBP22.97■■□□□ 1.27
UBE2D4-209ENST00000454428 HTATSF1O43719 755 aaKnown RBP22.96■■□□□ 1.27
UBE2D4-209ENST00000454428 TAF7Q15545 349 aaPredicted RBP22.96■■□□□ 1.27
UBE2D4-209ENST00000454428 AOC3Q16853 763 aa22.96■■□□□ 1.27
UBE2D4-209ENST00000454428 NIM1KQ8IY84 436 aa22.96■■□□□ 1.27
UBE2D4-209ENST00000454428 PPIP5K2O43314 1243 aa22.95■■□□□ 1.26
UBE2D4-209ENST00000454428 CELF2O95319 508 aaKnown RBP22.95■■□□□ 1.26
UBE2D4-209ENST00000454428 NTSR2O95665 410 aa22.95■■□□□ 1.26
UBE2D4-209ENST00000454428 RBM17Q96I25 401 aaKnown RBP22.95■■□□□ 1.26
UBE2D4-209ENST00000454428 GLIS2Q9BZE0 524 aaPredicted RBP22.95■■□□□ 1.26
UBE2D4-209ENST00000454428 PGAP2Q9UHJ9 254 aa22.95■■□□□ 1.26
UBE2D4-209ENST00000454428 U2AF1L5P0DN76 240 aaPredicted RBP22.94■■□□□ 1.26
UBE2D4-209ENST00000454428 U2AF1Q01081 240 aaKnown RBP eCLIP22.94■■□□□ 1.26
UBE2D4-209ENST00000454428 CXCL9Q07325 125 aa22.94■■□□□ 1.26
UBE2D4-209ENST00000454428 ZNF34Q8IZ26 560 aa22.94■■□□□ 1.26
UBE2D4-209ENST00000454428 HHIPL1Q96JK4 782 aa22.94■■□□□ 1.26
UBE2D4-209ENST00000454428 DLG5Q8TDM6 1919 aa22.94■■□□□ 1.26
UBE2D4-209ENST00000454428 BRPF1P55201 1214 aaPredicted RBP22.93■■□□□ 1.26
UBE2D4-209ENST00000454428 CFAP53Q96M91 514 aa22.93■■□□□ 1.26
UBE2D4-209ENST00000454428 ZBTB3Q9H5J0 574 aa22.93■■□□□ 1.26
UBE2D4-209ENST00000454428 CA12O43570 354 aa22.92■■□□□ 1.26
UBE2D4-209ENST00000454428 GMPSP49915 693 aaPredicted RBP22.92■■□□□ 1.26
UBE2D4-209ENST00000454428 HIRAP54198 1017 aaPredicted RBP22.92■■□□□ 1.26
UBE2D4-209ENST00000454428 ZIC5Q96T25 663 aa22.92■■□□□ 1.26
UBE2D4-209ENST00000454428 RRP7AQ9Y3A4 280 aaKnown RBP22.92■■□□□ 1.26
UBE2D4-209ENST00000454428 ATP6V0A2Q9Y487 856 aa22.92■■□□□ 1.26
UBE2D4-209ENST00000454428 RTFDC1Q9BY42 306 aaPredicted RBP22.91■■□□□ 1.26
UBE2D4-209ENST00000454428 VPS33BQ9H267 617 aa22.91■■□□□ 1.26
UBE2D4-209ENST00000454428 ZNRF3Q9ULT6 936 aa22.91■■□□□ 1.26
UBE2D4-209ENST00000454428 NUDCQ9Y266 331 aa22.91■■□□□ 1.26
UBE2D4-209ENST00000454428 MYL6BP14649 208 aa22.9■■□□□ 1.26
UBE2D4-209ENST00000454428 CIAPIN1Q6FI81 312 aa22.9■■□□□ 1.26
UBE2D4-209ENST00000454428 KIF6Q6ZMV9 814 aa22.9■■□□□ 1.26
UBE2D4-209ENST00000454428 PCDH10Q9P2E7 1040 aa22.9■■□□□ 1.26
UBE2D4-209ENST00000454428 LAMB2P55268 1798 aa22.9■■□□□ 1.26
UBE2D4-209ENST00000454428 EIF4A1P60842 406 aaKnown RBP22.89■■□□□ 1.25
UBE2D4-209ENST00000454428 TRPM4Q8TD43 1214 aa22.89■■□□□ 1.25
UBE2D4-209ENST00000454428 PDE4DIPQ5VU43 2346 aa22.89■■□□□ 1.25
UBE2D4-209ENST00000454428 ABCC4O15439 1325 aa22.88■■□□□ 1.25
UBE2D4-209ENST00000454428 SHTN1A0MZ66 631 aa22.88■■□□□ 1.25
UBE2D4-209ENST00000454428 DGKZQ13574 1117 aa22.88■■□□□ 1.25
UBE2D4-209ENST00000454428 GIGYF2Q6Y7W6 1299 aaKnown RBP22.88■■□□□ 1.25
UBE2D4-209ENST00000454428 CFAP44Q96MT7 982 aa22.88■■□□□ 1.25
UBE2D4-209ENST00000454428 PPP2R1AP30153 589 aa22.87■■□□□ 1.25
UBE2D4-209ENST00000454428 SLC10A5Q5PT55 438 aa22.87■■□□□ 1.25
UBE2D4-209ENST00000454428 LRP10Q7Z4F1 713 aa22.87■■□□□ 1.25
UBE2D4-209ENST00000454428 DLK2Q6UY11 383 aa22.86■■□□□ 1.25
UBE2D4-209ENST00000454428 ZC3H15Q8WU90 426 aaKnown RBP22.86■■□□□ 1.25
UBE2D4-209ENST00000454428 ZNF408Q9H9D4 720 aa22.86■■□□□ 1.25
UBE2D4-209ENST00000454428 CDHR2Q9BYE9 1310 aa22.85■■□□□ 1.25
UBE2D4-209ENST00000454428 DUOX1Q9NRD9 1551 aa22.85■■□□□ 1.25
UBE2D4-209ENST00000454428 NLRP3Q96P20 1036 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms