RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 ZSWIM6Q9HCJ5 1215 aa19.27■□□□□ 0.68
SHQ1-202ENST00000444040 CHRNA2Q15822 529 aa19.27■□□□□ 0.67
SHQ1-202ENST00000444040 FAM227BQ96M60 508 aa19.27■□□□□ 0.67
SHQ1-202ENST00000444040 TNS3Q68CZ2 1445 aa19.27■□□□□ 0.67
SHQ1-202ENST00000444040 SYCE3A1L190 88 aa19.26■□□□□ 0.67
SHQ1-202ENST00000444040 VPS53Q5VIR6 699 aa19.26■□□□□ 0.67
SHQ1-202ENST00000444040 HIP1O00291 1037 aa19.26■□□□□ 0.67
SHQ1-202ENST00000444040 NMIQ13287 307 aaPredicted RBP19.26■□□□□ 0.67
SHQ1-202ENST00000444040 ANP32BQ92688 251 aaKnown RBP19.26■□□□□ 0.67
SHQ1-202ENST00000444040 MAP4K1Q92918 833 aa19.26■□□□□ 0.67
SHQ1-202ENST00000444040 ZSCAN21Q9Y5A6 473 aaPredicted RBP19.26■□□□□ 0.67
SHQ1-202ENST00000444040 STRCP1A6NGW2 1772 aa19.25■□□□□ 0.67
SHQ1-202ENST00000444040 LARGE1O95461 756 aa19.25■□□□□ 0.67
SHQ1-202ENST00000444040 TTC5Q8N0Z6 440 aa19.25■□□□□ 0.67
SHQ1-202ENST00000444040 JAKMIP1Q96N16 626 aaKnown RBP19.25■□□□□ 0.67
SHQ1-202ENST00000444040 FMNL2Q96PY5 1086 aa19.25■□□□□ 0.67
SHQ1-202ENST00000444040 COPRSQ9NQ92 184 aa19.25■□□□□ 0.67
SHQ1-202ENST00000444040 PKD1L3Q7Z443 1732 aa19.24■□□□□ 0.67
SHQ1-202ENST00000444040 RFX5P48382 616 aaPredicted RBP19.24■□□□□ 0.67
SHQ1-202ENST00000444040 PIP4K2AP48426 406 aaPredicted RBP19.24■□□□□ 0.67
SHQ1-202ENST00000444040 BOLA2Q9H3K6 86 aa19.24■□□□□ 0.67
SHQ1-202ENST00000444040 PDRG1Q9NUG6 133 aa19.24■□□□□ 0.67
SHQ1-202ENST00000444040 RBM8AQ9Y5S9 174 aaKnown RBP19.24■□□□□ 0.67
SHQ1-202ENST00000444040 GDPD2Q9HCC8 539 aa19.24■□□□□ 0.67
SHQ1-202ENST00000444040 ZSCAN22P10073 491 aaPredicted RBP19.24■□□□□ 0.67
SHQ1-202ENST00000444040 SYT1P21579 422 aa19.24■□□□□ 0.67
SHQ1-202ENST00000444040 FOXD4L6Q3SYB3 417 aaPredicted RBP19.24■□□□□ 0.67
SHQ1-202ENST00000444040 FOXD4L3Q6VB84 417 aaPredicted RBP19.24■□□□□ 0.67
SHQ1-202ENST00000444040 USP48Q86UV5 1035 aa19.24■□□□□ 0.67
SHQ1-202ENST00000444040 TMEM87AQ8NBN3 555 aa19.24■□□□□ 0.67
SHQ1-202ENST00000444040 COL15A1P39059 1388 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 GADD45BO75293 160 aaPredicted RBP19.23■□□□□ 0.67
SHQ1-202ENST00000444040 CREB3L3Q68CJ9 461 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 CYP46A1Q9Y6A2 500 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 SPATA31A3Q5VYP0 1347 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 A0A0D9SFI3 127 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 STX6O43752 255 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 RABL6Q3YEC7 729 aaPredicted RBP19.23■□□□□ 0.67
SHQ1-202ENST00000444040 CADPS2Q86UW7 1296 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 PDLIM2Q96JY6 352 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 CPDO75976 1380 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 GLI3P10071 1580 aa19.23■□□□□ 0.67
SHQ1-202ENST00000444040 PTPN12Q05209 780 aaKnown RBP19.22■□□□□ 0.67
SHQ1-202ENST00000444040 SMC3Q9UQE7 1217 aa19.22■□□□□ 0.67
SHQ1-202ENST00000444040 ZKSCAN1P17029 563 aaPredicted RBP19.22■□□□□ 0.67
SHQ1-202ENST00000444040 JARID2Q92833 1246 aaPredicted RBP19.22■□□□□ 0.67
SHQ1-202ENST00000444040 ZSCAN31Q96LW9 406 aaPredicted RBP19.22■□□□□ 0.67
SHQ1-202ENST00000444040 MED23Q9ULK4 1368 aa19.21■□□□□ 0.67
SHQ1-202ENST00000444040 CABP4P57796 275 aa19.21■□□□□ 0.67
SHQ1-202ENST00000444040 ST3GAL1Q11201 340 aa19.21■□□□□ 0.67
SHQ1-202ENST00000444040 FSD1Q9BTV5 496 aa19.21■□□□□ 0.67
SHQ1-202ENST00000444040 SH2B1Q9NRF2 756 aaPredicted RBP19.21■□□□□ 0.67
SHQ1-202ENST00000444040 SLC27A2O14975 620 aa19.2■□□□□ 0.66
SHQ1-202ENST00000444040 CCDC83Q8IWF9 413 aa19.2■□□□□ 0.66
SHQ1-202ENST00000444040 UBE3BQ7Z3V4 1068 aa19.2■□□□□ 0.66
SHQ1-202ENST00000444040 JCADQ9P266 1359 aa19.2■□□□□ 0.66
SHQ1-202ENST00000444040 CASP7P55210 303 aa19.2■□□□□ 0.66
SHQ1-202ENST00000444040 DBNLQ9UJU6 430 aaKnown RBP19.2■□□□□ 0.66
SHQ1-202ENST00000444040 F13A1P00488 732 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 COL9A3Q14050 684 aaPredicted RBP19.19■□□□□ 0.66
SHQ1-202ENST00000444040 ME3Q16798 604 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 DDX54Q8TDD1 881 aaKnown RBP19.19■□□□□ 0.66
SHQ1-202ENST00000444040 ATP5JP18859 108 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 GJB2P29033 226 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 TNNI3KQ59H18 835 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 PLBD2Q8NHP8 589 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 SYAP1Q96A49 352 aaPredicted RBP19.19■□□□□ 0.66
SHQ1-202ENST00000444040 CNPY2Q9Y2B0 182 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 FPGT-TNNI3KV9GXZ4 949 aa19.19■□□□□ 0.66
SHQ1-202ENST00000444040 ATP5J2-PTCD1G3V325 749 aa19.18■□□□□ 0.66
SHQ1-202ENST00000444040 PTCD1O75127 700 aaKnown RBP19.18■□□□□ 0.66
SHQ1-202ENST00000444040 TFCP2Q12800 502 aa19.18■□□□□ 0.66
SHQ1-202ENST00000444040 ARFGEF2Q9Y6D5 1785 aa19.18■□□□□ 0.66
SHQ1-202ENST00000444040 A0A087WZG4 1122 aa19.18■□□□□ 0.66
SHQ1-202ENST00000444040 KCNJ4P48050 445 aa19.18■□□□□ 0.66
SHQ1-202ENST00000444040 ZNF589Q86UQ0 364 aaPredicted RBP19.18■□□□□ 0.66
SHQ1-202ENST00000444040 EDC3Q96F86 508 aaKnown RBP19.18■□□□□ 0.66
SHQ1-202ENST00000444040 ZSCAN30Q86W11 494 aa19.17■□□□□ 0.66
SHQ1-202ENST00000444040 TPCN1Q9ULQ1 816 aa19.17■□□□□ 0.66
SHQ1-202ENST00000444040 PARP4Q9UKK3 1724 aaKnown RBP19.17■□□□□ 0.66
SHQ1-202ENST00000444040 PSMA5P28066 241 aa19.17■□□□□ 0.66
SHQ1-202ENST00000444040 HS1BP3Q53T59 392 aa19.17■□□□□ 0.66
SHQ1-202ENST00000444040 MTMR6Q9Y217 621 aa19.17■□□□□ 0.66
SHQ1-202ENST00000444040 NBPF26B4DH59 902 aa19.16■□□□□ 0.66
SHQ1-202ENST00000444040 NBPF14Q5TI25 921 aa19.16■□□□□ 0.66
SHQ1-202ENST00000444040 NBPF10Q6P3W6 841 aaKnown RBP19.16■□□□□ 0.66
SHQ1-202ENST00000444040 NBPF15Q8N660 670 aa19.16■□□□□ 0.66
SHQ1-202ENST00000444040 TAF6LQ9Y6J9 622 aa19.16■□□□□ 0.66
SHQ1-202ENST00000444040 AFDNP55196 1824 aaKnown RBP19.16■□□□□ 0.66
SHQ1-202ENST00000444040 LAMB4A4D0S4 1761 aa19.16■□□□□ 0.66
SHQ1-202ENST00000444040 TSGA10IPQ3SY00 556 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 TCHHQ07283 1943 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 TAF5LO75529 589 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 RNF20Q5VTR2 975 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 ALDH8A1Q9H2A2 487 aaPredicted RBP19.15■□□□□ 0.66
SHQ1-202ENST00000444040 TSPY26PQ9H489 355 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 ATP6V1DQ9Y5K8 247 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 DTNBO60941 627 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 NECAB1Q8N987 351 aa19.15■□□□□ 0.66
SHQ1-202ENST00000444040 USPL1Q5W0Q7 1092 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms