RNA–Protein interactions for RNA: ENST00000425444.1

SGCE-203, Transcript of sarcoglycan epsilon, humanhuman

TSL 3

Gene SGCE, Length 597 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SGCE-203ENST00000425444 TLL2Q9Y6L7 1015 aa16.76■□□□□ 0.27
SGCE-203ENST00000425444 TRAF5O00463 557 aa16.75■□□□□ 0.27
SGCE-203ENST00000425444 LMOD1P29536 600 aaPredicted RBP16.75■□□□□ 0.27
SGCE-203ENST00000425444 IARSP41252 1262 aaKnown RBP16.75■□□□□ 0.27
SGCE-203ENST00000425444 WDR43Q15061 677 aaKnown RBP eCLIP16.75■□□□□ 0.27
SGCE-203ENST00000425444 TAF7Q15545 349 aaPredicted RBP16.75■□□□□ 0.27
SGCE-203ENST00000425444 RTKN2Q8IZC4 609 aa16.75■□□□□ 0.27
SGCE-203ENST00000425444 TRPM7Q96QT4 1865 aa16.75■□□□□ 0.27
SGCE-203ENST00000425444 PRPF38BQ5VTL8 546 aaKnown RBP16.74■□□□□ 0.27
SGCE-203ENST00000425444 PRKRIP1Q9H875 184 aaPredicted RBP16.74■□□□□ 0.27
SGCE-203ENST00000425444 SCN7AQ01118 1682 aa16.74■□□□□ 0.27
SGCE-203ENST00000425444 DLG5Q8TDM6 1919 aa16.74■□□□□ 0.27
SGCE-203ENST00000425444 SNRPA1P09661 255 aaKnown RBP16.73■□□□□ 0.27
SGCE-203ENST00000425444 NPR1P16066 1061 aa16.73■□□□□ 0.27
SGCE-203ENST00000425444 SOX10P56693 466 aa16.73■□□□□ 0.27
SGCE-203ENST00000425444 SYNE4Q8N205 404 aa16.73■□□□□ 0.27
SGCE-203ENST00000425444 JDP2Q8WYK2 163 aa16.73■□□□□ 0.27
SGCE-203ENST00000425444 A1BGP04217 495 aa16.72■□□□□ 0.27
SGCE-203ENST00000425444 IL6STP40189 918 aaPredicted RBP16.72■□□□□ 0.27
SGCE-203ENST00000425444 PNISRQ8TF01 805 aaKnown RBP16.72■□□□□ 0.27
SGCE-203ENST00000425444 THUMPD2Q9BTF0 503 aaKnown RBP16.72■□□□□ 0.27
SGCE-203ENST00000425444 MIS18AQ9NYP9 233 aa16.72■□□□□ 0.27
SGCE-203ENST00000425444 PRAMEF22A3QJZ6 481 aa16.71■□□□□ 0.27
SGCE-203ENST00000425444 CAMTA2O94983 1202 aa16.71■□□□□ 0.27
SGCE-203ENST00000425444 EPS15P42566 896 aa16.71■□□□□ 0.27
SGCE-203ENST00000425444 BRPF1P55201 1214 aaPredicted RBP16.71■□□□□ 0.27
SGCE-203ENST00000425444 EIF6P56537 245 aaKnown RBP16.71■□□□□ 0.27
SGCE-203ENST00000425444 NBPF5PQ86XG9 351 aaPredicted RBP16.71■□□□□ 0.27
SGCE-203ENST00000425444 CCDC146Q8IYE0 955 aa16.71■□□□□ 0.27
SGCE-203ENST00000425444 USP16Q9Y5T5 823 aa16.71■□□□□ 0.27
SGCE-203ENST00000425444 RIPK4P57078 832 aa16.7■□□□□ 0.26
SGCE-203ENST00000425444 CIAPIN1Q6FI81 312 aa16.7■□□□□ 0.26
SGCE-203ENST00000425444 SAPCD2Q86UD0 394 aa16.7■□□□□ 0.26
SGCE-203ENST00000425444 CELF2O95319 508 aaKnown RBP16.69■□□□□ 0.26
SGCE-203ENST00000425444 PIP4K2AP48426 406 aaPredicted RBP16.69■□□□□ 0.26
SGCE-203ENST00000425444 SCNN1DP51172 638 aa16.69■□□□□ 0.26
SGCE-203ENST00000425444 LMOD3Q0VAK6 560 aa16.69■□□□□ 0.26
SGCE-203ENST00000425444 USP50Q70EL3 339 aaPredicted RBP16.69■□□□□ 0.26
SGCE-203ENST00000425444 TMPOP42166 694 aaKnown RBP16.68■□□□□ 0.26
SGCE-203ENST00000425444 RRP7AQ9Y3A4 280 aaKnown RBP16.68■□□□□ 0.26
SGCE-203ENST00000425444 KDM3BQ7LBC6 1761 aa16.68■□□□□ 0.26
SGCE-203ENST00000425444 NEUROD2Q15784 382 aa16.67■□□□□ 0.26
SGCE-203ENST00000425444 DZIP3Q86Y13 1208 aaKnown RBP16.67■□□□□ 0.26
SGCE-203ENST00000425444 RUNDC1Q96C34 613 aa16.67■□□□□ 0.26
SGCE-203ENST00000425444 TSPYL4Q9UJ04 414 aa16.67■□□□□ 0.26
SGCE-203ENST00000425444 LAMB4A4D0S4 1761 aa16.66■□□□□ 0.26
SGCE-203ENST00000425444 KLRG2A4D1S0 409 aaPredicted RBP16.66■□□□□ 0.26
SGCE-203ENST00000425444 ZNF316A6NFI3 1004 aaPredicted RBP16.66■□□□□ 0.26
SGCE-203ENST00000425444 ALDH1B1P30837 517 aa16.66■□□□□ 0.26
SGCE-203ENST00000425444 HHIPL1Q96JK4 782 aa16.66■□□□□ 0.26
SGCE-203ENST00000425444 PSMD1Q99460 953 aa16.66■□□□□ 0.26
SGCE-203ENST00000425444 EIF4A1P60842 406 aaKnown RBP16.65■□□□□ 0.26
SGCE-203ENST00000425444 ADAMTS8Q9UP79 889 aa16.65■□□□□ 0.26
SGCE-203ENST00000425444 TPTE2Q6XPS3 522 aa16.64■□□□□ 0.25
SGCE-203ENST00000425444 LARGE2Q8N3Y3 721 aa16.64■□□□□ 0.25
SGCE-203ENST00000425444 ZNF408Q9H9D4 720 aa16.64■□□□□ 0.25
SGCE-203ENST00000425444 ZNF652Q9Y2D9 606 aa16.64■□□□□ 0.25
SGCE-203ENST00000425444 BCORQ6W2J9 1755 aa16.64■□□□□ 0.25
SGCE-203ENST00000425444 FAM177BA6PVY3 158 aa16.63■□□□□ 0.25
SGCE-203ENST00000425444 NOGQ13253 232 aa16.63■□□□□ 0.25
SGCE-203ENST00000425444 ZIC5Q96T25 663 aa16.63■□□□□ 0.25
SGCE-203ENST00000425444 ADARB2Q9NS39 739 aaKnown RBP16.63■□□□□ 0.25
SGCE-203ENST00000425444 COL4A5P29400 1685 aa16.62■□□□□ 0.25
SGCE-203ENST00000425444 NBPF26B4DH59 902 aa16.62■□□□□ 0.25
SGCE-203ENST00000425444 NBPF10Q6P3W6 841 aaKnown RBP16.62■□□□□ 0.25
SGCE-203ENST00000425444 CLEC4GQ6UXB4 293 aa16.62■□□□□ 0.25
SGCE-203ENST00000425444 NBPF15Q8N660 670 aa16.62■□□□□ 0.25
SGCE-203ENST00000425444 GLIS2Q9BZE0 524 aaPredicted RBP16.62■□□□□ 0.25
SGCE-203ENST00000425444 NIP7Q9Y221 180 aaKnown RBP eCLIP16.61■□□□□ 0.25
SGCE-203ENST00000425444 LAS1LQ9Y4W2 734 aaKnown RBP16.61■□□□□ 0.25
SGCE-203ENST00000425444 MKI67P46013 3256 aaKnown RBP16.6■□□□□ 0.25
SGCE-203ENST00000425444 GTF2E1P29083 439 aaPredicted RBP16.6■□□□□ 0.25
SGCE-203ENST00000425444 CC2D2BQ6DHV5 1058 aa16.6■□□□□ 0.25
SGCE-203ENST00000425444 NGEFQ8N5V2 710 aa16.6■□□□□ 0.25
SGCE-203ENST00000425444 BABAM1Q9NWV8 329 aa16.6■□□□□ 0.25
SGCE-203ENST00000425444 GPRC5DQ9NZD1 345 aa16.6■□□□□ 0.25
SGCE-203ENST00000425444 ANP32CO43423 234 aa16.59■□□□□ 0.25
SGCE-203ENST00000425444 MYL6BP14649 208 aa16.59■□□□□ 0.25
SGCE-203ENST00000425444 NIM1KQ8IY84 436 aa16.59■□□□□ 0.25
SGCE-203ENST00000425444 SNED1Q8TER0 1413 aa16.59■□□□□ 0.25
SGCE-203ENST00000425444 HUNKP57058 714 aa16.58■□□□□ 0.24
SGCE-203ENST00000425444 KIF6Q6ZMV9 814 aa16.58■□□□□ 0.24
SGCE-203ENST00000425444 TRIM35Q9UPQ4 493 aa16.58■□□□□ 0.24
SGCE-203ENST00000425444 ERBB4Q15303 1308 aa16.57■□□□□ 0.24
SGCE-203ENST00000425444 EIF2S2P20042 333 aaKnown RBP16.57■□□□□ 0.24
SGCE-203ENST00000425444 SAGE1Q9NXZ1 904 aa16.57■□□□□ 0.24
SGCE-203ENST00000425444 APAF1O14727 1248 aa16.56■□□□□ 0.24
SGCE-203ENST00000425444 TRPA1O75762 1119 aa16.56■□□□□ 0.24
SGCE-203ENST00000425444 GCC1Q96CN9 775 aa16.56■□□□□ 0.24
SGCE-203ENST00000425444 TCERG1O14776 1098 aaKnown RBP16.55■□□□□ 0.24
SGCE-203ENST00000425444 RGL2O15211 777 aa16.55■□□□□ 0.24
SGCE-203ENST00000425444 PPIP5K2O43314 1243 aa16.55■□□□□ 0.24
SGCE-203ENST00000425444 GMPSP49915 693 aaPredicted RBP16.55■□□□□ 0.24
SGCE-203ENST00000425444 GRIPAP1Q4V328 841 aa16.55■□□□□ 0.24
SGCE-203ENST00000425444 CDC37L1Q7L3B6 337 aa16.55■□□□□ 0.24
SGCE-203ENST00000425444 CTU1Q7Z7A3 348 aaKnown RBP16.55■□□□□ 0.24
SGCE-203ENST00000425444 RPGRQ92834 1020 aaKnown RBP16.55■□□□□ 0.24
SGCE-203ENST00000425444 PGAP2Q9UHJ9 254 aa16.55■□□□□ 0.24
SGCE-203ENST00000425444 MAP3K15Q6ZN16 1313 aa16.54■□□□□ 0.24
SGCE-203ENST00000425444 HLFQ16534 295 aa16.54■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms