RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 DDX21Q9NR30 783 aaKnown RBP eCLIP27.77■■■□□ 2.04
PTPN4-202ENST00000420482 RNF123Q5XPI4 1314 aa27.76■■■□□ 2.03
PTPN4-202ENST00000420482 CC2D2BQ6DHV5 1058 aa27.76■■■□□ 2.03
PTPN4-202ENST00000420482 COPS6Q7L5N1 327 aa27.76■■■□□ 2.03
PTPN4-202ENST00000420482 LRP10Q7Z4F1 713 aa27.76■■■□□ 2.03
PTPN4-202ENST00000420482 NTSR2O95665 410 aa27.75■■■□□ 2.03
PTPN4-202ENST00000420482 AIMP1Q12904 312 aaKnown RBP27.75■■■□□ 2.03
PTPN4-202ENST00000420482 PROSER3Q2NL68 480 aa27.75■■■□□ 2.03
PTPN4-202ENST00000420482 GRIPAP1Q4V328 841 aa27.75■■■□□ 2.03
PTPN4-202ENST00000420482 HDGFL1Q5TGJ6 251 aa27.75■■■□□ 2.03
PTPN4-202ENST00000420482 RBM17Q96I25 401 aaKnown RBP27.75■■■□□ 2.03
PTPN4-202ENST00000420482 UTP14AQ9BVJ6 771 aaKnown RBP27.75■■■□□ 2.03
PTPN4-202ENST00000420482 ANXA1P04083 346 aa27.74■■■□□ 2.03
PTPN4-202ENST00000420482 XAGE3Q8WTP9 111 aa27.74■■■□□ 2.03
PTPN4-202ENST00000420482 NLRP3Q96P20 1036 aa27.74■■■□□ 2.03
PTPN4-202ENST00000420482 TMX4Q9H1E5 349 aaPredicted RBP27.74■■■□□ 2.03
PTPN4-202ENST00000420482 POTECB2RU33 542 aa27.73■■■□□ 2.03
PTPN4-202ENST00000420482 HOXA10P31260 410 aaPredicted RBP27.73■■■□□ 2.03
PTPN4-202ENST00000420482 DBF4Q9UBU7 674 aaPredicted RBP27.72■■■□□ 2.03
PTPN4-202ENST00000420482 APAF1O14727 1248 aa27.71■■■□□ 2.03
PTPN4-202ENST00000420482 CRAMP1Q96RY5 1269 aa27.71■■■□□ 2.03
PTPN4-202ENST00000420482 SCN4AP35499 1836 aa27.7■■■□□ 2.02
PTPN4-202ENST00000420482 IQCA1LA6NCM1 817 aa27.7■■■□□ 2.02
PTPN4-202ENST00000420482 GNAI1P63096 354 aa27.7■■■□□ 2.02
PTPN4-202ENST00000420482 KRT24Q2M2I5 525 aa27.7■■■□□ 2.02
PTPN4-202ENST00000420482 PSMD1Q99460 953 aa27.7■■■□□ 2.02
PTPN4-202ENST00000420482 ZNF277Q9NRM2 450 aaPredicted RBP27.7■■■□□ 2.02
PTPN4-202ENST00000420482 CHPF2Q9P2E5 772 aa27.7■■■□□ 2.02
PTPN4-202ENST00000420482 TCIRG1Q13488 830 aa27.69■■■□□ 2.02
PTPN4-202ENST00000420482 CHMP4AQ9BY43 222 aa27.69■■■□□ 2.02
PTPN4-202ENST00000420482 IFT57Q9NWB7 429 aa27.69■■■□□ 2.02
PTPN4-202ENST00000420482 ANKRD36CQ5JPF3 1778 aa27.68■■■□□ 2.02
PTPN4-202ENST00000420482 DDNO94850 711 aaPredicted RBP27.68■■■□□ 2.02
PTPN4-202ENST00000420482 IARSP41252 1262 aaKnown RBP27.68■■■□□ 2.02
PTPN4-202ENST00000420482 SLC10A5Q5PT55 438 aa27.68■■■□□ 2.02
PTPN4-202ENST00000420482 SYNE4Q8N205 404 aa27.68■■■□□ 2.02
PTPN4-202ENST00000420482 JDP2Q8WYK2 163 aa27.68■■■□□ 2.02
PTPN4-202ENST00000420482 HYPKQ9NX55 129 aa27.68■■■□□ 2.02
PTPN4-202ENST00000420482 DUSP27Q5VZP5 1158 aa27.67■■■□□ 2.02
PTPN4-202ENST00000420482 OLFM4Q6UX06 510 aa27.67■■■□□ 2.02
PTPN4-202ENST00000420482 MBIPQ9NS73 344 aa27.67■■■□□ 2.02
PTPN4-202ENST00000420482 PPEF1O14829 653 aaPredicted RBP27.66■■■□□ 2.02
PTPN4-202ENST00000420482 ANKRD13DQ6ZTN6 518 aa27.66■■■□□ 2.02
PTPN4-202ENST00000420482 NLRP10Q86W26 655 aa27.66■■■□□ 2.02
PTPN4-202ENST00000420482 PLBD2Q8NHP8 589 aa27.66■■■□□ 2.02
PTPN4-202ENST00000420482 TRMT112Q9UI30 125 aaKnown RBP27.66■■■□□ 2.02
PTPN4-202ENST00000420482 PCNTO95613 3336 aa27.66■■■□□ 2.02
PTPN4-202ENST00000420482 ZNF853P0CG23 659 aa27.64■■■□□ 2.02
PTPN4-202ENST00000420482 SH3TC1Q8TE82 1336 aa27.64■■■□□ 2.01
PTPN4-202ENST00000420482 L3MBTL3Q96JM7 780 aaPredicted RBP27.63■■■□□ 2.01
PTPN4-202ENST00000420482 CHADLQ6NUI6 762 aa27.6■■■□□ 2.01
PTPN4-202ENST00000420482 DDX46Q7L014 1031 aaKnown RBP27.6■■■□□ 2.01
PTPN4-202ENST00000420482 FZD9O00144 591 aa27.59■■■□□ 2.01
PTPN4-202ENST00000420482 TCERG1O14776 1098 aaKnown RBP27.59■■■□□ 2.01
PTPN4-202ENST00000420482 BBOX1O75936 387 aa27.59■■■□□ 2.01
PTPN4-202ENST00000420482 EIF6P56537 245 aaKnown RBP27.59■■■□□ 2.01
PTPN4-202ENST00000420482 GOLGA2Q08379 1002 aa27.59■■■□□ 2.01
PTPN4-202ENST00000420482 COL13A1Q5TAT6 717 aaPredicted RBP27.59■■■□□ 2.01
PTPN4-202ENST00000420482 C3orf67Q6ZVT6 689 aa27.59■■■□□ 2.01
PTPN4-202ENST00000420482 ATP6V0A2Q9Y487 856 aa27.59■■■□□ 2.01
PTPN4-202ENST00000420482 SNED1Q8TER0 1413 aa27.58■■■□□ 2.01
PTPN4-202ENST00000420482 ANP32CO43423 234 aa27.58■■■□□ 2.01
PTPN4-202ENST00000420482 HCLS1P14317 486 aaPredicted RBP27.58■■■□□ 2.01
PTPN4-202ENST00000420482 GPC2Q8N158 579 aa27.58■■■□□ 2.01
PTPN4-202ENST00000420482 LARGE2Q8N3Y3 721 aa27.58■■■□□ 2.01
PTPN4-202ENST00000420482 SUPT20HQ8NEM7 779 aa27.58■■■□□ 2.01
PTPN4-202ENST00000420482 VPS33BQ9H267 617 aa27.58■■■□□ 2.01
PTPN4-202ENST00000420482 RIC3Q7Z5B4 369 aa27.57■■■□□ 2
PTPN4-202ENST00000420482 HACL1Q9UJ83 578 aa27.57■■■□□ 2
PTPN4-202ENST00000420482 ABCC4O15439 1325 aa27.57■■■□□ 2
PTPN4-202ENST00000420482 ZNF541Q9H0D2 1346 aa27.57■■■□□ 2
PTPN4-202ENST00000420482 ADAMTSL1Q8N6G6 1762 aa27.56■■■□□ 2
PTPN4-202ENST00000420482 ZNF316A6NFI3 1004 aaPredicted RBP27.56■■■□□ 2
PTPN4-202ENST00000420482 LDHDQ86WU2 507 aa27.56■■■□□ 2
PTPN4-202ENST00000420482 TAF1DQ9H5J8 278 aaPredicted RBP27.56■■■□□ 2
PTPN4-202ENST00000420482 ELL2O00472 640 aaPredicted RBP27.55■■■□□ 2
PTPN4-202ENST00000420482 POTEIP0CG38 1075 aa27.55■■■□□ 2
PTPN4-202ENST00000420482 POTEJP0CG39 1038 aa27.55■■■□□ 2
PTPN4-202ENST00000420482 HSP90B1P14625 803 aaKnown RBP27.55■■■□□ 2
PTPN4-202ENST00000420482 TMC4Q7Z404 712 aa27.55■■■□□ 2
PTPN4-202ENST00000420482 ISCA1Q9BUE6 129 aa27.55■■■□□ 2
PTPN4-202ENST00000420482 CCDC30Q5VVM6 783 aa27.54■■■□□ 2
PTPN4-202ENST00000420482 PNMA8AQ86V59 439 aaPredicted RBP27.54■■■□□ 2
PTPN4-202ENST00000420482 SP8Q8IXZ3 490 aa27.54■■■□□ 2
PTPN4-202ENST00000420482 NIM1KQ8IY84 436 aa27.54■■■□□ 2
PTPN4-202ENST00000420482 DDX58O95786 925 aaKnown RBP27.53■■■□□ 2
PTPN4-202ENST00000420482 HSPA1AP0DMV8 641 aaKnown RBP27.53■■■□□ 2
PTPN4-202ENST00000420482 HSPA1BP0DMV9 641 aaKnown RBP27.53■■■□□ 2
PTPN4-202ENST00000420482 TRIM28Q13263 835 aaKnown RBP27.53■■■□□ 2
PTPN4-202ENST00000420482 GRAPQ13588 217 aa27.53■■■□□ 2
PTPN4-202ENST00000420482 CCDC27Q2M243 656 aa27.53■■■□□ 2
PTPN4-202ENST00000420482 GRAPLQ8TC17 118 aaPredicted RBP27.53■■■□□ 2
PTPN4-202ENST00000420482 CREBZFQ9NS37 354 aa27.53■■■□□ 2
PTPN4-202ENST00000420482 ATP5J2-PTCD1G3V325 749 aa27.52■■■□□ 2
PTPN4-202ENST00000420482 PPIP5K2O43314 1243 aa27.52■■■□□ 2
PTPN4-202ENST00000420482 DPP8Q6V1X1 898 aaPredicted RBP27.52■■■□□ 2
PTPN4-202ENST00000420482 MRS2Q9HD23 443 aa27.52■■■□□ 2
PTPN4-202ENST00000420482 LAMB2P55268 1798 aa27.52■■■□□ 2
PTPN4-202ENST00000420482 LMOD1P29536 600 aaPredicted RBP27.51■■□□□ 1.99
PTPN4-202ENST00000420482 EPHX2P34913 555 aa27.51■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms