RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 RTKN2Q8IZC4 609 aa18.89■□□□□ 0.61
NIF3L1-205ENST00000409588 C7orf43Q8WVR3 580 aa18.89■□□□□ 0.61
NIF3L1-205ENST00000409588 GLTPD2A6NH11 291 aa18.88■□□□□ 0.61
NIF3L1-205ENST00000409588 FAM177BA6PVY3 158 aa18.88■□□□□ 0.61
NIF3L1-205ENST00000409588 NFKBIEO00221 500 aa18.88■□□□□ 0.61
NIF3L1-205ENST00000409588 COPS6Q7L5N1 327 aa18.88■□□□□ 0.61
NIF3L1-205ENST00000409588 C16orf71Q8IYS4 520 aaPredicted RBP18.88■□□□□ 0.61
NIF3L1-205ENST00000409588 TAOK3Q9H2K8 898 aa18.88■□□□□ 0.61
NIF3L1-205ENST00000409588 RIC1Q4ADV7 1423 aa18.88■□□□□ 0.61
NIF3L1-205ENST00000409588 HAX1O00165 279 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 SBF1O95248 1867 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 HOXA10P31260 410 aaPredicted RBP18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 RASSF7Q02833 373 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 CCDC27Q2M243 656 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 CCDC93Q567U6 631 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 SLC10A5Q5PT55 438 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 HDGFL1Q5TGJ6 251 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 HYPKQ9NX55 129 aa18.87■□□□□ 0.61
NIF3L1-205ENST00000409588 HSPA6P17066 643 aa18.86■□□□□ 0.61
NIF3L1-205ENST00000409588 SUSD4Q5VX71 490 aa18.86■□□□□ 0.61
NIF3L1-205ENST00000409588 RBM46Q8TBY0 533 aaKnown RBP18.86■□□□□ 0.61
NIF3L1-205ENST00000409588 NLRP3Q96P20 1036 aa18.86■□□□□ 0.61
NIF3L1-205ENST00000409588 UTP14AQ9BVJ6 771 aaKnown RBP18.86■□□□□ 0.61
NIF3L1-205ENST00000409588 MBIPQ9NS73 344 aa18.86■□□□□ 0.61
NIF3L1-205ENST00000409588 NUP98P52948 1817 aa18.86■□□□□ 0.61
NIF3L1-205ENST00000409588 VEGFAP15692 232 aaPredicted RBP18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 GPTP24298 496 aa18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 TCIRG1Q13488 830 aa18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 ERFEQ4G0M1 354 aa18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 DUSP27Q5VZP5 1158 aa18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 ANKRD13DQ6ZTN6 518 aa18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 XAGE3Q8WTP9 111 aa18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 RPGRQ92834 1020 aaKnown RBP18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 NMRK2Q9NPI5 230 aa18.85■□□□□ 0.61
NIF3L1-205ENST00000409588 UBN2Q6ZU65 1347 aa18.84■□□□□ 0.61
NIF3L1-205ENST00000409588 NTSR2O95665 410 aa18.84■□□□□ 0.61
NIF3L1-205ENST00000409588 PROSER3Q2NL68 480 aa18.84■□□□□ 0.61
NIF3L1-205ENST00000409588 NUTM1Q86Y26 1132 aa18.84■□□□□ 0.61
NIF3L1-205ENST00000409588 PLBD2Q8NHP8 589 aa18.84■□□□□ 0.61
NIF3L1-205ENST00000409588 RBM17Q96I25 401 aaKnown RBP18.84■□□□□ 0.61
NIF3L1-205ENST00000409588 CRAMP1Q96RY5 1269 aa18.84■□□□□ 0.61
NIF3L1-205ENST00000409588 SPDYE2BA6NHP3 402 aa18.83■□□□□ 0.6
NIF3L1-205ENST00000409588 SPDYE6P0CI01 402 aa18.83■□□□□ 0.6
NIF3L1-205ENST00000409588 FSTL1Q12841 308 aa18.83■□□□□ 0.6
NIF3L1-205ENST00000409588 AIMP1Q12904 312 aaKnown RBP18.83■□□□□ 0.6
NIF3L1-205ENST00000409588 SPDYE2Q495Y8 402 aa18.83■□□□□ 0.6
NIF3L1-205ENST00000409588 RRAGCQ9HB90 399 aa18.83■□□□□ 0.6
NIF3L1-205ENST00000409588 CHPF2Q9P2E5 772 aa18.83■□□□□ 0.6
NIF3L1-205ENST00000409588 PRELPP51888 382 aa18.82■□□□□ 0.6
NIF3L1-205ENST00000409588 FKBP4Q02790 459 aaKnown RBP eCLIP18.82■□□□□ 0.6
NIF3L1-205ENST00000409588 NECTIN2Q92692 538 aa18.82■□□□□ 0.6
NIF3L1-205ENST00000409588 TMX4Q9H1E5 349 aaPredicted RBP18.82■□□□□ 0.6
NIF3L1-205ENST00000409588 ANXA1P04083 346 aa18.81■□□□□ 0.6
NIF3L1-205ENST00000409588 KRT24Q2M2I5 525 aa18.81■□□□□ 0.6
NIF3L1-205ENST00000409588 NLRP10Q86W26 655 aa18.81■□□□□ 0.6
NIF3L1-205ENST00000409588 MRS2Q9HD23 443 aa18.81■□□□□ 0.6
NIF3L1-205ENST00000409588 SLX4Q8IY92 1834 aa18.81■□□□□ 0.6
NIF3L1-205ENST00000409588 ARFGEF2Q9Y6D5 1785 aa18.81■□□□□ 0.6
NIF3L1-205ENST00000409588 COL11A2P13942 1736 aaPredicted RBP18.8■□□□□ 0.6
NIF3L1-205ENST00000409588 FER1L6Q2WGJ9 1857 aa18.8■□□□□ 0.6
NIF3L1-205ENST00000409588 APLP1P51693 650 aa18.8■□□□□ 0.6
NIF3L1-205ENST00000409588 TRIM28Q13263 835 aaKnown RBP18.8■□□□□ 0.6
NIF3L1-205ENST00000409588 PSMD1Q99460 953 aa18.8■□□□□ 0.6
NIF3L1-205ENST00000409588 BBOX1O75936 387 aa18.79■□□□□ 0.6
NIF3L1-205ENST00000409588 HSP90B1P14625 803 aaKnown RBP18.79■□□□□ 0.6
NIF3L1-205ENST00000409588 VPS33BQ9H267 617 aa18.79■□□□□ 0.6
NIF3L1-205ENST00000409588 TRMT112Q9UI30 125 aaKnown RBP18.79■□□□□ 0.6
NIF3L1-205ENST00000409588 IL16Q14005 1332 aa18.78■□□□□ 0.6
NIF3L1-205ENST00000409588 SH3TC1Q8TE82 1336 aa18.78■□□□□ 0.6
NIF3L1-205ENST00000409588 CCDC184Q52MB2 194 aa18.78■□□□□ 0.6
NIF3L1-205ENST00000409588 CCDC30Q5VVM6 783 aa18.78■□□□□ 0.6
NIF3L1-205ENST00000409588 WWC1Q8IX03 1113 aa18.78■□□□□ 0.6
NIF3L1-205ENST00000409588 ABCC12Q96J65 1359 aa18.78■□□□□ 0.6
NIF3L1-205ENST00000409588 SMC1BQ8NDV3 1235 aa18.77■□□□□ 0.6
NIF3L1-205ENST00000409588 TNRC6CQ9HCJ0 1690 aaKnown RBP18.76■□□□□ 0.59
NIF3L1-205ENST00000409588 DDX58O95786 925 aaKnown RBP18.76■□□□□ 0.59
NIF3L1-205ENST00000409588 TMC4Q7Z404 712 aa18.76■□□□□ 0.59
NIF3L1-205ENST00000409588 SYNE4Q8N205 404 aa18.76■□□□□ 0.59
NIF3L1-205ENST00000409588 ISCA1Q9BUE6 129 aa18.76■□□□□ 0.59
NIF3L1-205ENST00000409588 DICER1Q9UPY3 1922 aaKnown RBP18.75■□□□□ 0.59
NIF3L1-205ENST00000409588 IQCA1LA6NCM1 817 aa18.75■□□□□ 0.59
NIF3L1-205ENST00000409588 GOLGA2Q08379 1002 aa18.75■□□□□ 0.59
NIF3L1-205ENST00000409588 RIC3Q7Z5B4 369 aa18.75■□□□□ 0.59
NIF3L1-205ENST00000409588 WDR63Q8IWG1 891 aa18.75■□□□□ 0.59
NIF3L1-205ENST00000409588 JDP2Q8WYK2 163 aa18.75■□□□□ 0.59
NIF3L1-205ENST00000409588 CCDC88AQ3V6T2 1871 aa18.75■□□□□ 0.59
NIF3L1-205ENST00000409588 PPEF1O14829 653 aaPredicted RBP18.74■□□□□ 0.59
NIF3L1-205ENST00000409588 IARSP41252 1262 aaKnown RBP18.74■□□□□ 0.59
NIF3L1-205ENST00000409588 C8orf58Q8NAV2 365 aa18.74■□□□□ 0.59
NIF3L1-205ENST00000409588 ATP6V0A2Q9Y487 856 aa18.74■□□□□ 0.59
NIF3L1-205ENST00000409588 ELL2O00472 640 aaPredicted RBP18.73■□□□□ 0.59
NIF3L1-205ENST00000409588 MKRN4PQ13434 485 aaPredicted RBP18.73■□□□□ 0.59
NIF3L1-205ENST00000409588 DDX46Q7L014 1031 aaKnown RBP18.73■□□□□ 0.59
NIF3L1-205ENST00000409588 SP8Q8IXZ3 490 aa18.73■□□□□ 0.59
NIF3L1-205ENST00000409588 SUPT20HQ8NEM7 779 aa18.73■□□□□ 0.59
NIF3L1-205ENST00000409588 L3MBTL3Q96JM7 780 aaPredicted RBP18.73■□□□□ 0.59
NIF3L1-205ENST00000409588 CEP350Q5VT06 3117 aa18.73■□□□□ 0.59
NIF3L1-205ENST00000409588 POTECB2RU33 542 aa18.72■□□□□ 0.59
NIF3L1-205ENST00000409588 FZD9O00144 591 aa18.72■□□□□ 0.59
NIF3L1-205ENST00000409588 STK31Q9BXU1 1019 aa18.72■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms