RNA–Protein interactions for RNA: ENST00000399804.5

SCAF4-202, Transcript of SR-related CTD associated factor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF4, Length 4,127 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-202ENST00000399804 MBD3O95983 291 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 SNX21Q969T3 373 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 NACAP1Q9BZK3 213 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 NEURL1BA8MQ27 555 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 AIDAQ96BJ3 306 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 WDR17Q8IZU2 1322 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 CARD10Q9BWT7 1032 aa16.68■□□□□ 0.26
SCAF4-202ENST00000399804 RBM25P49756 843 aaKnown RBP16.67■□□□□ 0.26
SCAF4-202ENST00000399804 SART3Q15020 963 aaKnown RBP16.67■□□□□ 0.26
SCAF4-202ENST00000399804 RNF214Q8ND24 703 aa16.67■□□□□ 0.26
SCAF4-202ENST00000399804 TMX3Q96JJ7 454 aa16.67■□□□□ 0.26
SCAF4-202ENST00000399804 IMMTQ16891 758 aaKnown RBP16.67■□□□□ 0.26
SCAF4-202ENST00000399804 TIMM10P62072 90 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 TTLL7Q6ZT98 887 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 SMARCC1Q92922 1105 aaPredicted RBP16.66■□□□□ 0.26
SCAF4-202ENST00000399804 DDX11Q96FC9 970 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 NIP7Q9Y221 180 aaKnown RBP eCLIP16.66■□□□□ 0.26
SCAF4-202ENST00000399804 DHX16O60231 1041 aaKnown RBP16.66■□□□□ 0.26
SCAF4-202ENST00000399804 MRE11P49959 708 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 CEBPZQ03701 1054 aaKnown RBP16.66■□□□□ 0.26
SCAF4-202ENST00000399804 FERMT3Q86UX7 667 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 CYP27B1O15528 508 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 KIAA2012Q0VF49 1180 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 ATP2B3Q16720 1220 aa16.66■□□□□ 0.26
SCAF4-202ENST00000399804 ARHGEF28Q8N1W1 1705 aaKnown RBP16.66■□□□□ 0.26
SCAF4-202ENST00000399804 NRDCO43847 1150 aa16.65■□□□□ 0.26
SCAF4-202ENST00000399804 SLC5A1P13866 664 aa16.65■□□□□ 0.26
SCAF4-202ENST00000399804 TDO2P48775 406 aa16.65■□□□□ 0.26
SCAF4-202ENST00000399804 CCDC191Q8NCU4 936 aa16.65■□□□□ 0.26
SCAF4-202ENST00000399804 TCEANC2Q96MN5 208 aa16.65■□□□□ 0.26
SCAF4-202ENST00000399804 RBM8AQ9Y5S9 174 aaKnown RBP16.65■□□□□ 0.26
SCAF4-202ENST00000399804 IRS4O14654 1257 aaPredicted RBP16.65■□□□□ 0.26
SCAF4-202ENST00000399804 ANAPC15P60006 121 aa16.65■□□□□ 0.26
SCAF4-202ENST00000399804 CHAF1AQ13111 956 aaPredicted RBP16.65■□□□□ 0.26
SCAF4-202ENST00000399804 NMIQ13287 307 aaPredicted RBP16.65■□□□□ 0.26
SCAF4-202ENST00000399804 CCDC34Q96HJ3 373 aa16.65■□□□□ 0.26
SCAF4-202ENST00000399804 RASSF8Q8NHQ8 419 aa16.64■□□□□ 0.26
SCAF4-202ENST00000399804 MTMR7Q9Y216 660 aa16.64■□□□□ 0.25
SCAF4-202ENST00000399804 SAFBQ15424 915 aaKnown RBP eCLIP16.64■□□□□ 0.25
SCAF4-202ENST00000399804 ZNF594Q96JF6 807 aaPredicted RBP16.64■□□□□ 0.25
SCAF4-202ENST00000399804 C1orf167Q5SNV9 1468 aa16.64■□□□□ 0.25
SCAF4-202ENST00000399804 TULP1O00294 542 aaPredicted RBP16.64■□□□□ 0.25
SCAF4-202ENST00000399804 HELBQ8NG08 1087 aaPredicted RBP16.64■□□□□ 0.25
SCAF4-202ENST00000399804 CDCA7Q9BWT1 371 aaPredicted RBP16.64■□□□□ 0.25
SCAF4-202ENST00000399804 MAP3K12Q12852 859 aa16.63■□□□□ 0.25
SCAF4-202ENST00000399804 DBNDD2Q9BQY9 259 aa16.63■□□□□ 0.25
SCAF4-202ENST00000399804 KDRP35968 1356 aa16.63■□□□□ 0.25
SCAF4-202ENST00000399804 RAD21O60216 631 aa16.63■□□□□ 0.25
SCAF4-202ENST00000399804 SH2B1Q9NRF2 756 aaPredicted RBP16.63■□□□□ 0.25
SCAF4-202ENST00000399804 ASAP1Q9ULH1 1129 aa16.63■□□□□ 0.25
SCAF4-202ENST00000399804 FAM98CQ17RN3 349 aaKnown RBP16.63■□□□□ 0.25
SCAF4-202ENST00000399804 CAVIN4Q5BKX8 364 aa16.63■□□□□ 0.25
SCAF4-202ENST00000399804 CCDC73Q6ZRK6 1079 aa16.63■□□□□ 0.25
SCAF4-202ENST00000399804 CDC5LQ99459 802 aaKnown RBP16.63■□□□□ 0.25
SCAF4-202ENST00000399804 DIP2AQ14689 1571 aa16.62■□□□□ 0.25
SCAF4-202ENST00000399804 IQSEC2Q5JU85 1478 aa16.62■□□□□ 0.25
SCAF4-202ENST00000399804 BECN2A8MW95 431 aa16.62■□□□□ 0.25
SCAF4-202ENST00000399804 HAND2P61296 217 aa16.62■□□□□ 0.25
SCAF4-202ENST00000399804 EYA2O00167 538 aa16.62■□□□□ 0.25
SCAF4-202ENST00000399804 NASPP49321 788 aaPredicted RBP16.62■□□□□ 0.25
SCAF4-202ENST00000399804 CCDC152Q4G0S7 254 aa16.62■□□□□ 0.25
SCAF4-202ENST00000399804 KRT85P78386 507 aa16.61■□□□□ 0.25
SCAF4-202ENST00000399804 REREQ9P2R6 1566 aa16.61■□□□□ 0.25
SCAF4-202ENST00000399804 SIGLEC1Q9BZZ2 1709 aa16.61■□□□□ 0.25
SCAF4-202ENST00000399804 TNNI3KQ59H18 835 aa16.61■□□□□ 0.25
SCAF4-202ENST00000399804 UTP14AQ9BVJ6 771 aaKnown RBP16.61■□□□□ 0.25
SCAF4-202ENST00000399804 FPGT-TNNI3KV9GXZ4 949 aa16.61■□□□□ 0.25
SCAF4-202ENST00000399804 ATP2B1P20020 1258 aa16.61■□□□□ 0.25
SCAF4-202ENST00000399804 PAG1Q9NWQ8 432 aa16.61■□□□□ 0.25
SCAF4-202ENST00000399804 MCMDC2Q4G0Z9 681 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 NEK1Q96PY6 1258 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 CEP170BQ9Y4F5 1589 aaPredicted RBP16.6■□□□□ 0.25
SCAF4-202ENST00000399804 GOLGA6L19H0YKK7 550 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 ZNF213O14771 459 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 NBPF5PQ86XG9 351 aaPredicted RBP16.6■□□□□ 0.25
SCAF4-202ENST00000399804 AK7Q96M32 723 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 NAPBQ9H115 298 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 IBTKQ9P2D0 1353 aaPredicted RBP16.6■□□□□ 0.25
SCAF4-202ENST00000399804 IQSEC3Q9UPP2 1182 aaPredicted RBP16.6■□□□□ 0.25
SCAF4-202ENST00000399804 BAG4O95429 457 aaKnown RBP16.6■□□□□ 0.25
SCAF4-202ENST00000399804 RFC4P35249 363 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 EAF2Q96CJ1 260 aaPredicted RBP16.6■□□□□ 0.25
SCAF4-202ENST00000399804 NDUFB9Q9Y6M9 179 aa16.6■□□□□ 0.25
SCAF4-202ENST00000399804 HCLS1P14317 486 aaPredicted RBP16.59■□□□□ 0.25
SCAF4-202ENST00000399804 NECAB1Q8N987 351 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 TPM4P67936 248 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 TCIRG1Q13488 830 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 ANKIB1Q9P2G1 1089 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 A0A1B0GUL7 405 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 MINDY4BA8MYZ0 360 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 ZGPATQ8N5A5 531 aaKnown RBP16.59■□□□□ 0.25
SCAF4-202ENST00000399804 NUP133Q8WUM0 1156 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 GDPD2Q9HCC8 539 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 HMG20BQ9P0W2 317 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 CRB1P82279 1406 aa16.59■□□□□ 0.25
SCAF4-202ENST00000399804 HMGB1P09429 215 aaKnown RBP16.58■□□□□ 0.25
SCAF4-202ENST00000399804 SDF4Q9BRK5 362 aa16.58■□□□□ 0.25
SCAF4-202ENST00000399804 SGSM2O43147 1006 aa16.58■□□□□ 0.24
SCAF4-202ENST00000399804 SASS6Q6UVJ0 657 aa16.58■□□□□ 0.24
SCAF4-202ENST00000399804 SETDB2Q96T68 719 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms