RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 LUZP1Q86V48 1076 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 DDX54Q8TDD1 881 aaKnown RBP25.12■■□□□ 1.61
UPF3A-202ENST00000375299 EVI5LQ96CN4 794 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 GTPBP4Q9BZE4 634 aaKnown RBP25.12■■□□□ 1.61
UPF3A-202ENST00000375299 CHPF2Q9P2E5 772 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 ZHX1Q9UKY1 873 aaPredicted RBP25.12■■□□□ 1.61
UPF3A-202ENST00000375299 KDM3BQ7LBC6 1761 aa25.12■■□□□ 1.61
UPF3A-202ENST00000375299 CAMK4Q16566 473 aa25.11■■□□□ 1.61
UPF3A-202ENST00000375299 CHMP3Q9Y3E7 222 aa25.11■■□□□ 1.61
UPF3A-202ENST00000375299 FER1L4A9Z1Z3 1794 aa25.11■■□□□ 1.61
UPF3A-202ENST00000375299 PDCP20941 246 aa25.11■■□□□ 1.61
UPF3A-202ENST00000375299 FERMT3Q86UX7 667 aa25.11■■□□□ 1.61
UPF3A-202ENST00000375299 MED1Q15648 1581 aaPredicted RBP25.11■■□□□ 1.61
UPF3A-202ENST00000375299 HOXB7P09629 217 aa25.1■■□□□ 1.61
UPF3A-202ENST00000375299 ABTB2Q8N961 1025 aa25.1■■□□□ 1.61
UPF3A-202ENST00000375299 TNMDQ9H2S6 317 aa25.1■■□□□ 1.61
UPF3A-202ENST00000375299 CEMIPQ8WUJ3 1361 aa25.1■■□□□ 1.61
UPF3A-202ENST00000375299 EIF4A1P60842 406 aaKnown RBP25.1■■□□□ 1.61
UPF3A-202ENST00000375299 ADGRL3Q9HAR2 1447 aa25.1■■□□□ 1.61
UPF3A-202ENST00000375299 CBX8Q9HC52 389 aa25.1■■□□□ 1.61
UPF3A-202ENST00000375299 IFIT2P09913 472 aaKnown RBP25.09■■□□□ 1.61
UPF3A-202ENST00000375299 FAM173BQ6P4H8 233 aa25.09■■□□□ 1.61
UPF3A-202ENST00000375299 LTV1Q96GA3 475 aaPredicted RBP25.09■■□□□ 1.61
UPF3A-202ENST00000375299 PSMA5P28066 241 aa25.09■■□□□ 1.61
UPF3A-202ENST00000375299 ANO6Q4KMQ2 910 aa25.09■■□□□ 1.61
UPF3A-202ENST00000375299 CCDC186Q7Z3E2 898 aa25.09■■□□□ 1.61
UPF3A-202ENST00000375299 MAP4K1Q92918 833 aa25.09■■□□□ 1.61
UPF3A-202ENST00000375299 ADCY9O60503 1353 aa25.08■■□□□ 1.61
UPF3A-202ENST00000375299 KCNJ4P48050 445 aa25.08■■□□□ 1.61
UPF3A-202ENST00000375299 ERC1Q8IUD2 1116 aa25.08■■□□□ 1.61
UPF3A-202ENST00000375299 SCAND2PQ9GZW5 306 aaPredicted RBP25.08■■□□□ 1.61
UPF3A-202ENST00000375299 DDX19AQ9NUU7 478 aaKnown RBP25.08■■□□□ 1.61
UPF3A-202ENST00000375299 DACT1Q9NYF0 836 aa25.08■■□□□ 1.61
UPF3A-202ENST00000375299 CKAP2LQ8IYA6 745 aa25.08■■□□□ 1.6
UPF3A-202ENST00000375299 CHMP4AQ9BY43 222 aa25.08■■□□□ 1.6
UPF3A-202ENST00000375299 RBM43Q6ZSC3 357 aaKnown RBP25.07■■□□□ 1.6
UPF3A-202ENST00000375299 HIP1O00291 1037 aa25.07■■□□□ 1.6
UPF3A-202ENST00000375299 SLC27A2O14975 620 aa25.07■■□□□ 1.6
UPF3A-202ENST00000375299 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.07■■□□□ 1.6
UPF3A-202ENST00000375299 PLA2G4DQ86XP0 818 aa25.07■■□□□ 1.6
UPF3A-202ENST00000375299 NPHP3Q7Z494 1330 aa25.06■■□□□ 1.6
UPF3A-202ENST00000375299 GOLGA6L4A6NEF3 574 aa25.06■■□□□ 1.6
UPF3A-202ENST00000375299 ANKRD1Q15327 319 aa25.06■■□□□ 1.6
UPF3A-202ENST00000375299 SPATA32Q96LK8 384 aa25.06■■□□□ 1.6
UPF3A-202ENST00000375299 SPDYE4A6NLX3 237 aa25.05■■□□□ 1.6
UPF3A-202ENST00000375299 U2AF2P26368 475 aaKnown RBP eCLIP25.05■■□□□ 1.64e-7■■■■■ 39.1
UPF3A-202ENST00000375299 ZNF75DP51815 510 aa25.05■■□□□ 1.6
UPF3A-202ENST00000375299 NMIQ13287 307 aaPredicted RBP25.05■■□□□ 1.6
UPF3A-202ENST00000375299 DRC7Q8IY82 874 aa25.05■■□□□ 1.6
UPF3A-202ENST00000375299 TDRD7Q8NHU6 1098 aaKnown RBP25.05■■□□□ 1.6
UPF3A-202ENST00000375299 FAM227BQ96M60 508 aa25.05■■□□□ 1.6
UPF3A-202ENST00000375299 CLSTN2Q9H4D0 955 aa25.05■■□□□ 1.6
UPF3A-202ENST00000375299 SYCP1Q15431 976 aa25.05■■□□□ 1.6
UPF3A-202ENST00000375299 SNRKQ9NRH2 765 aa25.05■■□□□ 1.6
UPF3A-202ENST00000375299 LRMPQ12912 555 aa25.04■■□□□ 1.6
UPF3A-202ENST00000375299 AACSQ86V21 672 aa25.04■■□□□ 1.6
UPF3A-202ENST00000375299 PA2G4Q9UQ80 394 aaKnown RBP25.04■■□□□ 1.6
UPF3A-202ENST00000375299 SMTNL1A8MU46 457 aa25.04■■□□□ 1.6
UPF3A-202ENST00000375299 BLOC1S2Q6QNY1 142 aa25.04■■□□□ 1.6
UPF3A-202ENST00000375299 USHBP1Q8N6Y0 703 aa25.04■■□□□ 1.6
UPF3A-202ENST00000375299 TRIM5Q9C035 493 aa25.04■■□□□ 1.6
UPF3A-202ENST00000375299 ALDH8A1Q9H2A2 487 aaPredicted RBP25.04■■□□□ 1.6
UPF3A-202ENST00000375299 ANXA1P04083 346 aa25.03■■□□□ 1.6
UPF3A-202ENST00000375299 LEO1Q8WVC0 666 aaPredicted RBP25.03■■□□□ 1.6
UPF3A-202ENST00000375299 NCBP1Q09161 790 aaKnown RBP25.03■■□□□ 1.6
UPF3A-202ENST00000375299 COL9A3Q14050 684 aaPredicted RBP25.03■■□□□ 1.6
UPF3A-202ENST00000375299 ZSCAN25Q6NSZ9 544 aa25.03■■□□□ 1.6
UPF3A-202ENST00000375299 NRBP1Q9UHY1 535 aa25.03■■□□□ 1.6
UPF3A-202ENST00000375299 NPHP4O75161 1426 aaPredicted RBP25.03■■□□□ 1.6
UPF3A-202ENST00000375299 RPS6KB1P23443 525 aa25.02■■□□□ 1.6
UPF3A-202ENST00000375299 RNF20Q5VTR2 975 aa25.02■■□□□ 1.6
UPF3A-202ENST00000375299 LARP1Q6PKG0 1096 aaKnown RBP25.02■■□□□ 1.6
UPF3A-202ENST00000375299 C16orf45Q96MC5 204 aaPredicted RBP25.02■■□□□ 1.6
UPF3A-202ENST00000375299 ALDH1L1O75891 902 aa25.02■■□□□ 1.6
UPF3A-202ENST00000375299 FEZ1Q99689 392 aa25.02■■□□□ 1.6
UPF3A-202ENST00000375299 C9orf78Q9NZ63 289 aaPredicted RBP25.02■■□□□ 1.6
UPF3A-202ENST00000375299 TFIP11Q9UBB9 837 aaKnown RBP25.02■■□□□ 1.6
UPF3A-202ENST00000375299 C14orf37Q86TY3 774 aa25.01■■□□□ 1.59
UPF3A-202ENST00000375299 LTN1O94822 1766 aa25■■□□□ 1.59
UPF3A-202ENST00000375299 KCNQ3O43525 872 aa25■■□□□ 1.59
UPF3A-202ENST00000375299 TOB2Q14106 344 aaPredicted RBP25■■□□□ 1.59
UPF3A-202ENST00000375299 TCEANC2Q96MN5 208 aa25■■□□□ 1.59
UPF3A-202ENST00000375299 LGR6Q9HBX8 967 aa25■■□□□ 1.59
UPF3A-202ENST00000375299 KIF20AO95235 890 aa25■■□□□ 1.59
UPF3A-202ENST00000375299 TNNT1P13805 278 aa25■■□□□ 1.59
UPF3A-202ENST00000375299 HDAC5Q9UQL6 1122 aa25■■□□□ 1.59
UPF3A-202ENST00000375299 ZNF165P49910 485 aa24.99■■□□□ 1.59
UPF3A-202ENST00000375299 PHF8Q9UPP1 1060 aa24.99■■□□□ 1.59
UPF3A-202ENST00000375299 A0A0D9SFI3 127 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 NR1I2O75469 434 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 MAP3K2Q9Y2U5 619 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 MED23Q9ULK4 1368 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 BICD2Q8TD16 824 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 IP6K1Q92551 441 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 PGBD1Q96JS3 809 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 DNAJC25Q9H1X3 360 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 PAXBP1Q9Y5B6 917 aa24.98■■□□□ 1.59
UPF3A-202ENST00000375299 CDC25BP30305 580 aa24.97■■□□□ 1.59
UPF3A-202ENST00000375299 DBF4Q9UBU7 674 aaPredicted RBP24.97■■□□□ 1.59
UPF3A-202ENST00000375299 CLIP2Q9UDT6 1046 aa24.97■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms