RNA–Protein interactions for RNA: ENST00000339865.9

USP47-202, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 2 BASIC

Gene USP47, Length 7,775 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-202ENST00000339865 STMN1P16949 149 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 TWISTNBQ3B726 338 aaPredicted RBP14.65□□□□□ -0.06
USP47-202ENST00000339865 MKNK2Q9HBH9 465 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 PRDM2Q13029 1718 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 TMEM110-MUSTN1A8MSY1 372 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 TXNDC9O14530 226 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 UBASH3AP57075 661 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 DNAI1Q9UI46 699 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 LCA5Q86VQ0 697 aa14.65□□□□□ -0.06
USP47-202ENST00000339865 ATP2A1O14983 1001 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 CEP128Q6ZU80 1094 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 ARHGEF2Q92974 986 aaKnown RBP14.64□□□□□ -0.07
USP47-202ENST00000339865 AIDAQ96BJ3 306 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 VIMP08670 466 aaKnown RBP14.64□□□□□ -0.07
USP47-202ENST00000339865 EFCAB2Q5VUJ9 269 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 ZNF165P49910 485 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 SDCCAG8Q86SQ7 713 aaPredicted RBP14.64□□□□□ -0.07
USP47-202ENST00000339865 TMOD2Q9NZR1 351 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 CTAGE15A4D2H0 777 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 CTAGE8P0CG41 777 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 HSP90AA4PQ58FG1 418 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 CTAGE4Q8IX94 777 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 IFT81Q8WYA0 676 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 TLDC2A0PJX2 215 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 SRGAP3O43295 1099 aa14.64□□□□□ -0.07
USP47-202ENST00000339865 CCT4P50991 539 aaKnown RBP14.64□□□□□ -0.07
USP47-202ENST00000339865 HSPA1LP34931 641 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 HDGFL1Q5TGJ6 251 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 CAPZA3Q96KX2 299 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 CNTLNQ9NXG0 1405 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 MCM5P33992 734 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 CALML4Q96GE6 196 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 AKR1B10O60218 316 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 MVPQ14764 893 aaKnown RBP14.63□□□□□ -0.07
USP47-202ENST00000339865 NBPF11Q86T75 865 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 ADAMTS8Q9UP79 889 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 GKAP1Q5VSY0 366 aaPredicted RBP14.63□□□□□ -0.07
USP47-202ENST00000339865 KIF20AO95235 890 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 GOLGA1Q92805 767 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 PANK2Q9BZ23 570 aa14.63□□□□□ -0.07
USP47-202ENST00000339865 RRBP1Q9P2E9 1410 aaKnown RBP14.63□□□□□ -0.07
USP47-202ENST00000339865 CCDC196A0A1B0GTZ2 297 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 PHAXQ9H814 394 aaKnown RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 XAB2Q9HCS7 855 aaKnown RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 IL1RAPL2Q9NP60 686 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 RBM28Q9NW13 759 aaKnown RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 IDEP14735 1019 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 EXOSC9Q06265 439 aaKnown RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 TTC12Q9H892 705 aaPredicted RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 ZNF287Q9HBT7 754 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 TFIP11Q9UBB9 837 aaKnown RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 IRX5P78411 483 aaPredicted RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 MAP7Q14244 749 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 IFT74Q96LB3 600 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 HGSO14964 777 aaPredicted RBP14.62□□□□□ -0.07
USP47-202ENST00000339865 AMPD3Q01432 767 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 GJC1P36383 396 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 ARID5AQ03989 594 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 RSPH3Q86UC2 560 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 MTHFSP49914 203 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 PLCB3Q01970 1234 aa14.62□□□□□ -0.07
USP47-202ENST00000339865 N4BP3O15049 544 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 CCT2P78371 535 aaKnown RBP14.61□□□□□ -0.07
USP47-202ENST00000339865 UBLCP1Q8WVY7 318 aaPredicted RBP14.61□□□□□ -0.07
USP47-202ENST00000339865 LARP6Q9BRS8 491 aaKnown RBP14.61□□□□□ -0.07
USP47-202ENST00000339865 SAMM50Q9Y512 469 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 CXorf38Q8TB03 319 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 CCDC50Q8IVM0 306 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 CCT6BQ92526 530 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 GGNBP2Q9H3C7 697 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 RBM27Q9P2N5 1060 aaKnown RBP14.61□□□□□ -0.07
USP47-202ENST00000339865 NLRP5P59047 1200 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 B4GALNT4Q76KP1 1039 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 TCP11L1Q9NUJ3 509 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 STX6O43752 255 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 CCDC172P0C7W6 258 aa14.61□□□□□ -0.07
USP47-202ENST00000339865 TSR2Q969E8 191 aaKnown RBP14.61□□□□□ -0.07
USP47-202ENST00000339865 CRCPO75575 148 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 POLR3DP05423 398 aaPredicted RBP14.6□□□□□ -0.07
USP47-202ENST00000339865 SSRP1Q08945 709 aaKnown RBP14.6□□□□□ -0.07
USP47-202ENST00000339865 FAM76AQ8TAV0 307 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 PDCD7Q8N8D1 485 aaKnown RBP14.6□□□□□ -0.07
USP47-202ENST00000339865 RAD54L2Q9Y4B4 1467 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 PDE3AQ14432 1141 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 UAP1Q16222 522 aaPredicted RBP14.6□□□□□ -0.07
USP47-202ENST00000339865 A0A087WZG4 1122 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 CYLC1P35663 651 aaPredicted RBP14.6□□□□□ -0.07
USP47-202ENST00000339865 TAF12Q16514 161 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 CUL5Q93034 780 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 BICD1Q96G01 975 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 MIER3Q7Z3K6 550 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 GTF3C6Q969F1 213 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 VPS8Q8N3P4 1428 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 RAB11FIP3O75154 756 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 ALDH3A1P30838 453 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 HPDP32754 393 aaPredicted RBP14.6□□□□□ -0.07
USP47-202ENST00000339865 ERCC6LQ2NKX8 1250 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 SH2D4BQ5SQS7 431 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 BANK1Q8NDB2 785 aa14.6□□□□□ -0.07
USP47-202ENST00000339865 EEF2P13639 858 aaKnown RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 151.6 ms