RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 CCDC87Q9NVE4 849 aa5.15□□□□□ -1.59
MCF2-201ENST00000338585 PA2G4Q9UQ80 394 aaKnown RBP5.15□□□□□ -1.59
MCF2-201ENST00000338585 IBTKQ9P2D0 1353 aaPredicted RBP5.14□□□□□ -1.59
MCF2-201ENST00000338585 NHSQ6T4R5 1651 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 MAP3K15Q6ZN16 1313 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 ZBTB22O15209 634 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 SURF6O75683 361 aaKnown RBP5.14□□□□□ -1.59
MCF2-201ENST00000338585 GPTP24298 496 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 IL6STP40189 918 aaPredicted RBP5.14□□□□□ -1.59
MCF2-201ENST00000338585 EIF5P55010 431 aaKnown RBP5.14□□□□□ -1.59
MCF2-201ENST00000338585 TCIRG1Q13488 830 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 MTX1Q13505 466 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 DZIP3Q86Y13 1208 aaKnown RBP5.14□□□□□ -1.59
MCF2-201ENST00000338585 PLEKHM2Q8IWE5 1019 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 CWC25Q9NXE8 425 aaPredicted RBP5.14□□□□□ -1.59
MCF2-201ENST00000338585 BRWD3Q6RI45 1802 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 SBF2Q86WG5 1849 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 H7C1W4 665 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 SEC24BO95487 1268 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 GIGYF2Q6Y7W6 1299 aaKnown RBP5.14□□□□□ -1.59
MCF2-201ENST00000338585 KLHDC4Q8TBB5 520 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 ISCA1Q9BUE6 129 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 IL1RAPL2Q9NP60 686 aa5.14□□□□□ -1.59
MCF2-201ENST00000338585 CICQ96RK0 1608 aaPredicted RBP5.13□□□□□ -1.59
MCF2-201ENST00000338585 COL5A3P25940 1745 aaPredicted RBP5.13□□□□□ -1.59
MCF2-201ENST00000338585 TSHZ3Q63HK5 1081 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 MAMSTRQ6ZN01 415 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 KRT27Q7Z3Y8 459 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 SYNE4Q8N205 404 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 CCDC191Q8NCU4 936 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 LRRCC1Q9C099 1032 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 ZBTB47Q9UFB7 747 aaPredicted RBP5.13□□□□□ -1.59
MCF2-201ENST00000338585 RREB1Q92766 1687 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 GSPT1P15170 499 aaKnown RBP5.13□□□□□ -1.59
MCF2-201ENST00000338585 FOXO4P98177 505 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 NPM2Q86SE8 214 aaKnown RBP5.13□□□□□ -1.59
MCF2-201ENST00000338585 RHPN1Q8TCX5 695 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 FAM89AQ96GI7 184 aa5.13□□□□□ -1.59
MCF2-201ENST00000338585 CCNL1Q9UK58 526 aaPredicted RBP5.13□□□□□ -1.59
MCF2-201ENST00000338585 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.13□□□□□ -1.59
MCF2-201ENST00000338585 UBN2Q6ZU65 1347 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 PRKCSHP14314 528 aaPredicted RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 RABL6Q3YEC7 729 aaPredicted RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 ZNF772Q68DY9 489 aaPredicted RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 LMBR1LQ6UX01 489 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 NLRP10Q86W26 655 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 AMIGO3Q86WK7 504 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 SIL1Q9H173 461 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 HDAC5Q9UQL6 1122 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 NOP58Q9Y2X3 529 aaKnown RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 NUP98P52948 1817 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 SALL3Q9BXA9 1300 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 EP400Q96L91 3159 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 COL15A1P39059 1388 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 TRIM37O94972 964 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 CAMTA2O94983 1202 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 RFX5P48382 616 aaPredicted RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 RBM6P78332 1123 aaKnown RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 TRIM28Q13263 835 aaKnown RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 OS9Q13438 667 aaPredicted RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 BMP2KLQ5H9B9 411 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 NUTM1Q86Y26 1132 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 BCL11BQ9C0K0 894 aaPredicted RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 RGS17Q9UGC6 210 aaPredicted RBP5.12□□□□□ -1.59
MCF2-201ENST00000338585 CHMP3Q9Y3E7 222 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 ZNF831Q5JPB2 1677 aa5.12□□□□□ -1.59
MCF2-201ENST00000338585 FAM177BA6PVY3 158 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 ERVV-1B6SEH8 477 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 RAB11FIP3O75154 756 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 SASH1O94885 1247 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 TTC22Q5TAA0 569 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 FAM196AQ6ZSG2 479 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 SPDYE1Q8NFV5 336 aaPredicted RBP5.11□□□□□ -1.59
MCF2-201ENST00000338585 CCDC85AQ96PX6 553 aaPredicted RBP5.11□□□□□ -1.59
MCF2-201ENST00000338585 LRRC4BQ9NT99 713 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 ANKRD36CQ5JPF3 1778 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 CNTNAP4Q9C0A0 1308 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 LY75O60449 1722 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 GNPATO15228 680 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 PCCAP05165 728 aaPredicted RBP5.11□□□□□ -1.59
MCF2-201ENST00000338585 MX1P20591 662 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 PDE1AP54750 535 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 PTPN12Q05209 780 aaKnown RBP5.11□□□□□ -1.59
MCF2-201ENST00000338585 ZNF34Q8IZ26 560 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 ZBTB38Q8NAP3 1195 aaPredicted RBP5.11□□□□□ -1.59
MCF2-201ENST00000338585 KIF1BPQ96EK5 621 aa5.11□□□□□ -1.59
MCF2-201ENST00000338585 HSP90AB3PQ58FF7 597 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 SUSD4Q5VX71 490 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 POTEAQ6S8J7 498 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 FBXO41Q8TF61 875 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 ZNF594Q96JF6 807 aaPredicted RBP5.1□□□□□ -1.59
MCF2-201ENST00000338585 SRP68Q9UHB9 627 aaKnown RBP5.1□□□□□ -1.59
MCF2-201ENST00000338585 TRMT112Q9UI30 125 aaKnown RBP5.1□□□□□ -1.59
MCF2-201ENST00000338585 TAF1LQ8IZX4 1826 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 RPS6KA4O75676 772 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 SDSP20132 328 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 RXRBP28702 533 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 G3BP1Q13283 466 aaKnown RBP eCLIP5.1□□□□□ -1.59
MCF2-201ENST00000338585 HSP90AB4PQ58FF6 505 aa5.1□□□□□ -1.59
MCF2-201ENST00000338585 OSBPL3Q9H4L5 887 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms