RNA–Protein interactions for RNA: ENST00000302516.9

SF3B3-201, Transcript of splicing factor 3b subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B3, Length 9,720 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-201ENST00000302516 RBM42Q9BTD8 480 aaKnown RBP8.76□□□□□ -1.01
SF3B3-201ENST00000302516 MNAT1P51948 309 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 JADE2Q9NQC1 790 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 ZFYVE9O95405 1425 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 IFIT1P09914 478 aaKnown RBP8.76□□□□□ -1.01
SF3B3-201ENST00000302516 CYLC1P35663 651 aaPredicted RBP8.76□□□□□ -1.01
SF3B3-201ENST00000302516 IKBKGQ9Y6K9 419 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 IDH1O75874 414 aaKnown RBP8.76□□□□□ -1.01
SF3B3-201ENST00000302516 CKAP2LQ8IYA6 745 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 CFAP57Q96MR6 1250 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 MAPKBP1O60336 1514 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 MTIF2P46199 727 aaKnown RBP8.76□□□□□ -1.01
SF3B3-201ENST00000302516 TUBB2AQ13885 445 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 TUBB2BQ9BVA1 445 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 SPECC1Q5M775 1068 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 ATL3Q6DD88 541 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 TBC1D5Q92609 795 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 DNMT1P26358 1616 aaKnown RBP8.76□□□□□ -1.01
SF3B3-201ENST00000302516 GTF2A1P52655 376 aaPredicted RBP8.76□□□□□ -1.01
SF3B3-201ENST00000302516 STRN4Q9NRL3 753 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 ECHDC1Q9NTX5 307 aa8.76□□□□□ -1.01
SF3B3-201ENST00000302516 CTAGE15A4D2H0 777 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 CTAGE8P0CG41 777 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 TDRD12Q587J7 1177 aaKnown RBP8.75□□□□□ -1.01
SF3B3-201ENST00000302516 CTAGE6Q86UF2 777 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 FERMT3Q86UX7 667 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 CTAGE4Q8IX94 777 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 ZNF213O14771 459 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 ZKSCAN5Q9Y2L8 839 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 ADGRL1O94910 1474 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 MPHOSPH10O00566 681 aaKnown RBP8.75□□□□□ -1.01
SF3B3-201ENST00000302516 FAM69CQ0P6D2 419 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 USP37Q86T82 979 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 IL1RAPL2Q9NP60 686 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 C11orf95C9JLR9 678 aaPredicted RBP8.75□□□□□ -1.01
SF3B3-201ENST00000302516 NOLC1Q14978 699 aaKnown RBP eCLIP8.75□□□□□ -1.018e-9■■■■■ 58.7
SF3B3-201ENST00000302516 TMOD2Q9NZR1 351 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 NOL12Q9UGY1 213 aaKnown RBP eCLIP8.75□□□□□ -1.017e-7■□□□□ 8.4
SF3B3-201ENST00000302516 GOLGA8AA7E2F4 631 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 TXNDC2Q86VQ3 553 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 TSNARE1Q96NA8 513 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 EXOC1Q9NV70 894 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 FERP16591 822 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 MAST1Q9Y2H9 1570 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 GNG11P61952 73 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 CEP128Q6ZU80 1094 aa8.75□□□□□ -1.01
SF3B3-201ENST00000302516 TICAM2Q86XR7 235 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 ERMNQ8TAM6 284 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 PBRM1Q86U86 1689 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 IFIT5Q13325 482 aaKnown RBP8.74□□□□□ -1.01
SF3B3-201ENST00000302516 DBF4Q9UBU7 674 aaPredicted RBP8.74□□□□□ -1.01
SF3B3-201ENST00000302516 LMBR1Q8WVP7 490 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 SLU7O95391 586 aaKnown RBP8.74□□□□□ -1.01
SF3B3-201ENST00000302516 ANKRD24Q8TF21 1146 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 KIF4AO95239 1232 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 CTNNA2P26232 953 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 SYKP43405 635 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 NCOA7Q8NI08 942 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 BCCIPQ9P287 314 aaKnown RBP eCLIP8.74□□□□□ -1.012e-7■■■■□ 24.4
SF3B3-201ENST00000302516 CCDC61Q9Y6R9 512 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 KRT83P78385 493 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 CNNM2Q9H8M5 875 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 ARHGAP30Q7Z6I6 1101 aaPredicted RBP8.74□□□□□ -1.01
SF3B3-201ENST00000302516 TRMT1Q9NXH9 659 aaKnown RBP8.74□□□□□ -1.01
SF3B3-201ENST00000302516 SHANK2Q9UPX8 1470 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 SKILP12757 684 aa8.74□□□□□ -1.01
SF3B3-201ENST00000302516 UBASH3AP57075 661 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 KIAA0753Q2KHM9 967 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 CCDC40Q4G0X9 1142 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 TOM1L2Q6ZVM7 507 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 ZFYP08048 801 aaPredicted RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 CCDC129Q6ZRS4 1044 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 CCDC121Q6ZUS5 278 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 CTNNBL1Q8WYA6 563 aaPredicted RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 KRT23Q9C075 422 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 OGFRQ9NZT2 677 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 RBM27Q9P2N5 1060 aaKnown RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 METAP2P50579 478 aaKnown RBP eCLIP8.73□□□□□ -1.011e-6■□□□□ 10.5
SF3B3-201ENST00000302516 PDE4BQ07343 736 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 TMTC2Q8N394 836 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 JAKMIP2Q96AA8 810 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 LRRC45Q96CN5 670 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 INTS4Q96HW7 963 aaKnown RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 CCDC77Q9BR77 488 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 USP5P45974 858 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 UBE4AQ14139 1066 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 TERF1P54274 439 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 CCDC96Q2M329 555 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 SMAP1Q8IYB5 467 aaPredicted RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 MRPS27Q92552 414 aaKnown RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 PIK3C2GO75747 1445 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 TTC31Q49AM3 519 aaPredicted RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 SWAP70Q9UH65 585 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 RTL1A6NKG5 1358 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 KRT86O43790 486 aa8.73□□□□□ -1.01
SF3B3-201ENST00000302516 SPTY2D1Q68D10 685 aaPredicted RBP8.73□□□□□ -1.01
SF3B3-201ENST00000302516 BICDL2A1A5D9 508 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 TACC1O75410 805 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 ANO6Q4KMQ2 910 aa8.72□□□□□ -1.01
SF3B3-201ENST00000302516 RRS1Q15050 365 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms