RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 SLC4A10Q6U841 1118 aa15.52■□□□□ 0.08
NUP54-201ENST00000264883 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.52■□□□□ 0.08
NUP54-201ENST00000264883 TRIM5Q9C035 493 aa15.52■□□□□ 0.08
NUP54-201ENST00000264883 EFCC1Q9HA90 598 aa15.52■□□□□ 0.08
NUP54-201ENST00000264883 ZNF446Q9NWS9 450 aa15.52■□□□□ 0.08
NUP54-201ENST00000264883 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.52■□□□□ 0.08
NUP54-201ENST00000264883 TRPM3Q9HCF6 1732 aaPredicted RBP15.52■□□□□ 0.07
NUP54-201ENST00000264883 CCDC171Q6TFL3 1326 aa15.52■□□□□ 0.07
NUP54-201ENST00000264883 ZNF335Q9H4Z2 1342 aaPredicted RBP15.52■□□□□ 0.07
NUP54-201ENST00000264883 ZNF75DP51815 510 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 CCDC30Q5VVM6 783 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 KDRP35968 1356 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 RAB11FIP3O75154 756 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 SYT1P21579 422 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 HSPA4P34932 840 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 PLA2G4DQ86XP0 818 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 ABTB2Q8N961 1025 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 CACTINQ8WUQ7 758 aaKnown RBP15.51■□□□□ 0.07
NUP54-201ENST00000264883 BABAM1Q9NWV8 329 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 EXOC6BQ9Y2D4 811 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 MRVI1Q9Y6F6 885 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 SBNO1A3KN83 1393 aa15.51■□□□□ 0.07
NUP54-201ENST00000264883 PTPN14Q15678 1187 aa15.5■□□□□ 0.07
NUP54-201ENST00000264883 RNF20Q5VTR2 975 aa15.5■□□□□ 0.07
NUP54-201ENST00000264883 PSME1Q06323 249 aa15.5■□□□□ 0.07
NUP54-201ENST00000264883 TYRO3Q06418 890 aa15.5■□□□□ 0.07
NUP54-201ENST00000264883 MAP3K11Q16584 847 aa15.5■□□□□ 0.07
NUP54-201ENST00000264883 FLT4P35916 1363 aa15.5■□□□□ 0.07
NUP54-201ENST00000264883 HSP90AB2PQ58FF8 381 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 GTF3C6Q969F1 213 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 RILPL2Q969X0 211 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 NFAT5O94916 1531 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 FOXO3O43524 673 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 SLU7O95391 586 aaKnown RBP15.49■□□□□ 0.07
NUP54-201ENST00000264883 ATF3P18847 181 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 DNM1Q05193 864 aaKnown RBP15.49■□□□□ 0.07
NUP54-201ENST00000264883 CBX8Q9HC52 389 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 CLIP2Q9UDT6 1046 aa15.49■□□□□ 0.07
NUP54-201ENST00000264883 CHRM1P11229 460 aaPredicted RBP15.48■□□□□ 0.07
NUP54-201ENST00000264883 G2E3Q7L622 706 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 FLIIQ13045 1269 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 NUTM2GQ5VZR2 741 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 NYAP1Q6ZVC0 841 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 NUP62CLQ9H1M0 184 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 RASSF4Q9H2L5 321 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 RSPH14Q9UHP6 348 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 RAD50Q92878 1312 aa15.48■□□□□ 0.07
NUP54-201ENST00000264883 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.47■□□□□ 0.07
NUP54-201ENST00000264883 USP27XA6NNY8 438 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 F6X3S4 739 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 SOX12O15370 315 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 ANO6Q4KMQ2 910 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 TEX35Q5T0J7 233 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 CADPS2Q86UW7 1296 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 ZBTB9Q96C00 473 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 YY1AP1Q9H869 796 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 SMC3Q9UQE7 1217 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 ERBB3P21860 1342 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 NPHP1O15259 732 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 CAMK4Q16566 473 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 CCDC144BQ3MJ40 725 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 CCDC144CPQ8IYA2 1237 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 FHOD1Q9Y613 1164 aa15.47■□□□□ 0.07
NUP54-201ENST00000264883 H2AFXP16104 143 aaPredicted RBP15.46■□□□□ 0.07
NUP54-201ENST00000264883 TXLNBQ8N3L3 684 aa15.46■□□□□ 0.07
NUP54-201ENST00000264883 SLIT3O75094 1523 aa15.46■□□□□ 0.07
NUP54-201ENST00000264883 MUM1L1Q5H9M0 696 aa15.46■□□□□ 0.06
NUP54-201ENST00000264883 SSH3Q8TE77 659 aa15.46■□□□□ 0.06
NUP54-201ENST00000264883 PHRF1Q9P1Y6 1649 aaKnown RBP15.45■□□□□ 0.06
NUP54-201ENST00000264883 LTN1O94822 1766 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 ALS2Q96Q42 1657 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 PNMA6EA0A0J9YXQ4 647 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 MTHFSDQ2M296 383 aaKnown RBP15.45■□□□□ 0.06
NUP54-201ENST00000264883 TSHZ3Q63HK5 1081 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 LRRC8AQ8IWT6 810 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 NEK11Q8NG66 645 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 TDRD7Q8NHU6 1098 aaKnown RBP15.45■□□□□ 0.06
NUP54-201ENST00000264883 CRYBG1Q9Y4K1 1723 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 IGSF1Q8N6C5 1336 aa15.45■□□□□ 0.06
NUP54-201ENST00000264883 SGSM2O43147 1006 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 TTC14Q96N46 770 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 LIMCH1Q9UPQ0 1083 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 CHMP3Q9Y3E7 222 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 LTBP4Q8N2S1 1624 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 NEMFO60524 1076 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 UBTFL1P0CB47 393 aaPredicted RBP15.44■□□□□ 0.06
NUP54-201ENST00000264883 CDC25BP30305 580 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 PLA2G4AP47712 749 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 CKAP2LQ8IYA6 745 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 CNTROBQ8N137 903 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 TNMDQ9H2S6 317 aa15.44■□□□□ 0.06
NUP54-201ENST00000264883 PNMA6AP0CW24 399 aaPredicted RBP15.43■□□□□ 0.06
NUP54-201ENST00000264883 HSP90AB4PQ58FF6 505 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 KRT28Q7Z3Y7 464 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 MAP3K5Q99683 1374 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 HOXC9P31274 260 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 NOP2P46087 812 aaKnown RBP15.43■□□□□ 0.06
NUP54-201ENST00000264883 AMPHP49418 695 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 CLCN6P51797 869 aa15.43■□□□□ 0.06
NUP54-201ENST00000264883 TPM4P67936 248 aa15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms