RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 PRKCSHP14314 528 aaPredicted RBP19.69■□□□□ 0.74
HOXD3-201ENST00000249440 CPA1P15085 419 aa19.69■□□□□ 0.74
HOXD3-201ENST00000249440 ADCK5Q3MIX3 580 aa19.69■□□□□ 0.74
HOXD3-201ENST00000249440 SLC52A2Q9HAB3 445 aa19.69■□□□□ 0.74
HOXD3-201ENST00000249440 SCN11AQ9UI33 1791 aa19.68■□□□□ 0.74
HOXD3-201ENST00000249440 F13A1P00488 732 aa19.68■□□□□ 0.74
HOXD3-201ENST00000249440 IGKV5-2P06315 115 aa19.68■□□□□ 0.74
HOXD3-201ENST00000249440 RNF214Q8ND24 703 aa19.68■□□□□ 0.74
HOXD3-201ENST00000249440 CCDC8Q9H0W5 538 aaPredicted RBP19.68■□□□□ 0.74
HOXD3-201ENST00000249440 NPHP3Q7Z494 1330 aa19.67■□□□□ 0.74
HOXD3-201ENST00000249440 KCNJ4P48050 445 aa19.67■□□□□ 0.74
HOXD3-201ENST00000249440 MAP4K1Q92918 833 aa19.67■□□□□ 0.74
HOXD3-201ENST00000249440 CNPY2Q9Y2B0 182 aa19.67■□□□□ 0.74
HOXD3-201ENST00000249440 ZC3H6P61129 1189 aaKnown RBP19.67■□□□□ 0.74
HOXD3-201ENST00000249440 SLC39A6Q13433 755 aa19.67■□□□□ 0.74
HOXD3-201ENST00000249440 CCDC83Q8IWF9 413 aa19.67■□□□□ 0.74
HOXD3-201ENST00000249440 RBM8AQ9Y5S9 174 aaKnown RBP19.67■□□□□ 0.74
HOXD3-201ENST00000249440 NEURL1BA8MQ27 555 aa19.66■□□□□ 0.74
HOXD3-201ENST00000249440 LETM1O95202 739 aaPredicted RBP19.66■□□□□ 0.74
HOXD3-201ENST00000249440 LARGE1O95461 756 aa19.66■□□□□ 0.74
HOXD3-201ENST00000249440 GJB2P29033 226 aa19.66■□□□□ 0.74
HOXD3-201ENST00000249440 UBE2HP62256 183 aa19.66■□□□□ 0.74
HOXD3-201ENST00000249440 SNRKQ9NRH2 765 aa19.66■□□□□ 0.74
HOXD3-201ENST00000249440 MYL6BP14649 208 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 PSMA5P28066 241 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 NMIQ13287 307 aaPredicted RBP19.65■□□□□ 0.74
HOXD3-201ENST00000249440 GCKRQ14397 625 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 CSPP1Q1MSJ5 1256 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 CCDC183Q5T5S1 534 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 CREB3L3Q68CJ9 461 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 FAM184AQ8NB25 1140 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 FAM227BQ96M60 508 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 SIL1Q9H173 461 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 CCDC39Q9UFE4 941 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP19.65■□□□□ 0.74
HOXD3-201ENST00000249440 C5P01031 1676 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 TATP17735 454 aaPredicted RBP19.65■□□□□ 0.74
HOXD3-201ENST00000249440 NFATC2IPQ8NCF5 419 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 CABLES1Q8TDN4 633 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 NLRP2Q9NX02 1062 aa19.65■□□□□ 0.74
HOXD3-201ENST00000249440 OFD1O75665 1012 aa19.64■□□□□ 0.74
HOXD3-201ENST00000249440 MCM5P33992 734 aa19.64■□□□□ 0.74
HOXD3-201ENST00000249440 RNF20Q5VTR2 975 aa19.64■□□□□ 0.74
HOXD3-201ENST00000249440 FSD1Q9BTV5 496 aa19.64■□□□□ 0.74
HOXD3-201ENST00000249440 METTL22Q9BUU2 404 aaPredicted RBP19.64■□□□□ 0.74
HOXD3-201ENST00000249440 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP19.64■□□□□ 0.74
HOXD3-201ENST00000249440 ZNF500O60304 480 aaPredicted RBP19.64■□□□□ 0.73
HOXD3-201ENST00000249440 PDIA4P13667 645 aaKnown RBP19.64■□□□□ 0.73
HOXD3-201ENST00000249440 PHKG2P15735 406 aa19.64■□□□□ 0.73
HOXD3-201ENST00000249440 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.64■□□□□ 0.73
HOXD3-201ENST00000249440 COPS6Q7L5N1 327 aa19.64■□□□□ 0.73
HOXD3-201ENST00000249440 XAGE3Q8WTP9 111 aa19.64■□□□□ 0.73
HOXD3-201ENST00000249440 BOLA2Q9H3K6 86 aa19.64■□□□□ 0.73
HOXD3-201ENST00000249440 ZKSCAN5Q9Y2L8 839 aa19.64■□□□□ 0.73
HOXD3-201ENST00000249440 KDM6AO15550 1401 aaPredicted RBP19.64■□□□□ 0.73
HOXD3-201ENST00000249440 TLR7Q9NYK1 1049 aaKnown RBP19.63■□□□□ 0.73
HOXD3-201ENST00000249440 ALS2Q96Q42 1657 aa19.63■□□□□ 0.73
HOXD3-201ENST00000249440 IFNL2Q8IZJ0 200 aa19.63■□□□□ 0.73
HOXD3-201ENST00000249440 MYD88Q99836 296 aa19.63■□□□□ 0.73
HOXD3-201ENST00000249440 ME3Q16798 604 aa19.62■□□□□ 0.73
HOXD3-201ENST00000249440 ANKRD13DQ6ZTN6 518 aa19.62■□□□□ 0.73
HOXD3-201ENST00000249440 KLHL34Q8N239 644 aa19.62■□□□□ 0.73
HOXD3-201ENST00000249440 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.62■□□□□ 0.73
HOXD3-201ENST00000249440 MTMR6Q9Y217 621 aa19.62■□□□□ 0.73
HOXD3-201ENST00000249440 SLC27A2O14975 620 aa19.62■□□□□ 0.73
HOXD3-201ENST00000249440 TPM2P07951 284 aa19.62■□□□□ 0.73
HOXD3-201ENST00000249440 UVSSAQ2YD98 709 aa19.62■□□□□ 0.73
HOXD3-201ENST00000249440 MRC1P22897 1456 aa19.61■□□□□ 0.73
HOXD3-201ENST00000249440 FIBPO43427 364 aa19.61■□□□□ 0.73
HOXD3-201ENST00000249440 ANKRD1Q15327 319 aa19.61■□□□□ 0.73
HOXD3-201ENST00000249440 TTC5Q8N0Z6 440 aa19.61■□□□□ 0.73
HOXD3-201ENST00000249440 KLHDC4Q8TBB5 520 aa19.61■□□□□ 0.73
HOXD3-201ENST00000249440 ZNF496Q96IT1 587 aaPredicted RBP19.61■□□□□ 0.73
HOXD3-201ENST00000249440 A0A0D9SFI3 127 aa19.6■□□□□ 0.73
HOXD3-201ENST00000249440 SNRPA1P09661 255 aaKnown RBP19.6■□□□□ 0.73
HOXD3-201ENST00000249440 COPRSQ9NQ92 184 aa19.6■□□□□ 0.73
HOXD3-201ENST00000249440 EPHA10Q5JZY3 1008 aa19.59■□□□□ 0.73
HOXD3-201ENST00000249440 BLOC1S2Q6QNY1 142 aa19.59■□□□□ 0.73
HOXD3-201ENST00000249440 HMG20BQ9P0W2 317 aa19.59■□□□□ 0.73
HOXD3-201ENST00000249440 TPCN1Q9ULQ1 816 aa19.59■□□□□ 0.73
HOXD3-201ENST00000249440 MED23Q9ULK4 1368 aa19.59■□□□□ 0.73
HOXD3-201ENST00000249440 DCAF5Q96JK2 942 aa19.59■□□□□ 0.73
HOXD3-201ENST00000249440 ROBO1Q9Y6N7 1651 aa19.59■□□□□ 0.73
HOXD3-201ENST00000249440 PIP4K2BP78356 416 aa19.58■□□□□ 0.73
HOXD3-201ENST00000249440 DNM1Q05193 864 aaKnown RBP19.58■□□□□ 0.73
HOXD3-201ENST00000249440 ST3GAL1Q11201 340 aa19.58■□□□□ 0.73
HOXD3-201ENST00000249440 DDX54Q8TDD1 881 aaKnown RBP19.58■□□□□ 0.73
HOXD3-201ENST00000249440 ALDH8A1Q9H2A2 487 aaPredicted RBP19.58■□□□□ 0.73
HOXD3-201ENST00000249440 USP16Q9Y5T5 823 aa19.58■□□□□ 0.73
HOXD3-201ENST00000249440 PLEKHG2Q9H7P9 1386 aa19.58■□□□□ 0.73
HOXD3-201ENST00000249440 ABCC6O95255 1503 aa19.58■□□□□ 0.73
HOXD3-201ENST00000249440 VPS37CA5D8V6 355 aaPredicted RBP19.58■□□□□ 0.72
HOXD3-201ENST00000249440 MEGF6O75095 1541 aa19.58■□□□□ 0.72
HOXD3-201ENST00000249440 CSB-PGBD3P0DP91 1061 aa19.58■□□□□ 0.72
HOXD3-201ENST00000249440 AFDNP55196 1824 aaKnown RBP19.58■□□□□ 0.72
HOXD3-201ENST00000249440 NECAB1Q8N987 351 aa19.58■□□□□ 0.72
HOXD3-201ENST00000249440 FMNL2Q96PY5 1086 aa19.58■□□□□ 0.72
HOXD3-201ENST00000249440 ATP5JP18859 108 aa19.57■□□□□ 0.72
HOXD3-201ENST00000249440 PDCP20941 246 aa19.57■□□□□ 0.72
HOXD3-201ENST00000249440 TERF1P54274 439 aa19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms