RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 ESCO2Q56NI9 601 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 RNF111Q6ZNA4 994 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 OR52P1PQ8NH57 321 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 FIBINQ8TAL6 211 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 ZCCHC10Q8TBK6 192 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SORCS1Q8WY21 1168 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 DUS3LQ96G46 650 aaKnown RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SGIP1Q9BQI5 828 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 UTP23Q9BRU9 249 aaKnown RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 C16orf70Q9BSU1 422 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 ULBP3Q9BZM4 244 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SEMA4CQ9C0C4 833 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 TESQ9UGI8 421 aaKnown RBP7.4□□□□□ -1.22
VPS13D-211ENST00000543710 SLC22A14Q9Y267 594 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 BCORQ6W2J9 1755 aa7.4□□□□□ -1.22
VPS13D-211ENST00000543710 FIGNL2A6NMB9 653 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 TGOLN2O43493 480 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 POP7O75817 140 aaKnown RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 SPARCP09486 303 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 SELENOWP63302 87 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 DEFA5Q01523 94 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 SYPL2Q5VXT5 272 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 GFRALQ6UXV0 394 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 SSX6Q7RTT6 188 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 COMMD7Q86VX2 200 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 OR6T1Q8NGN1 323 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 GRHL3Q8TE85 626 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 C16orf78Q8WTQ4 265 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 SPTSSAQ969W0 71 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 ZIC5Q96T25 663 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 TXN2Q99757 166 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 TIMM29Q9BSF4 260 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 KLHL13Q9P2N7 655 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 OR1A2Q9Y585 309 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 ENPP4Q9Y6X5 453 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 COL16A1Q07092 1604 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 ATXN7O15265 892 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 TLX2O43763 284 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 MT-CO3P00414 261 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 PIPP12273 146 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 CHMP24386 653 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 OR4D2P58180 307 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 S100A10P60903 97 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 TMEM115Q12893 351 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 KIAA1958Q8N8K9 716 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 OR6K6Q8NGW6 343 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 LRRN4Q8WUT4 740 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 TCTEX1D2Q8WW35 142 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 TFGQ92734 400 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 RAB39BQ96DA2 213 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 ISYNA1Q9NPH2 558 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 BOKQ9UMX3 212 aaPredicted RBP7.4□□□□□ -1.23
VPS13D-211ENST00000543710 SH2B3Q9UQQ2 575 aa7.4□□□□□ -1.23
VPS13D-211ENST00000543710 FOXO6A8MYZ6 492 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 M0R036 132 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ARHGAP33O14559 1287 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 KIAA0513O60268 411 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TPOP07202 933 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 GTF2F2P13984 249 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 DDCP20711 480 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 KDELR2P33947 212 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 AKR1D1P51857 326 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 GRK1Q15835 563 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 MSS51Q4VC12 460 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SLC35D3Q5M8T2 416 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 LRRC28Q86X40 367 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF101Q8IZC7 436 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TMEM163Q8TC26 289 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SMAP2Q8WU79 429 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 GAL3ST3Q96A11 431 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 PFDN5Q99471 154 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SDR39U1Q9NRG7 319 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 DCAF13Q9NV06 445 aaKnown RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 WRAP73Q9P2S5 460 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TBX21Q9UL17 535 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TEX13DA0A0J9YY54 714 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 LOC102725191A0A1B0GVB3 256 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ARRDC5A6NEK1 342 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 NPIPA2E9PIF3 369 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 NPIPA3F8WFD2 350 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TSPAN4O14817 238 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SH3BGRLO75368 114 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TAS2R46P59540 309 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 TGFBR3Q03167 851 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 MXD1Q05195 221 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 PEA15Q15121 130 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 CDK10Q15131 360 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 OTUD1Q5VV17 481 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 GPR139Q6DWJ6 353 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ANKRD46Q86W74 232 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 OR5AK2Q8NH90 309 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ASB5Q8WWX0 329 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 NSMAFQ92636 917 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 FBXL20Q96IG2 436 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 KLHL15Q96M94 604 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 ZNF436Q9C0F3 470 aaPredicted RBP7.39□□□□□ -1.23
VPS13D-211ENST00000543710 OR10A4Q9H209 315 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 PPA2Q9H2U2 334 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 SLCO5A1Q9H2Y9 848 aa7.39□□□□□ -1.23
VPS13D-211ENST00000543710 EMC7Q9NPA0 242 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 125.8 ms