RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 NINQ8N4C6 2090 aa13.75□□□□□ -0.21
NUP54-213ENST00000513352 SCO2O43819 266 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 H6PDO95479 791 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 GPX2P18283 190 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 CALB2P22676 271 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 CLK3P49761 638 aaKnown RBP13.74□□□□□ -0.21
NUP54-213ENST00000513352 PSME3P61289 254 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 KCNJ2P63252 427 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 FUT5Q11128 374 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.74□□□□□ -0.21
NUP54-213ENST00000513352 GRAMD1BQ3KR37 738 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 BICRALQ6AI39 1079 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 HEPHL1Q6MZM0 1159 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 PCSK4Q6UW60 755 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 C16orf89Q6UX73 402 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 GALNTL5Q7Z4T8 443 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 ZNF227Q86WZ6 799 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 FBXW8Q8N3Y1 598 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 NFKBIDQ8NI38 313 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 FAM110BQ8TC76 370 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 PAQR8Q8TEZ7 354 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 MAL2Q969L2 176 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 JSRP1Q96MG2 331 aaPredicted RBP13.74□□□□□ -0.21
NUP54-213ENST00000513352 HOPXQ9BPY8 73 aaPredicted RBP13.74□□□□□ -0.21
NUP54-213ENST00000513352 OSBPL11Q9BXB4 747 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 TBL1XR1Q9BZK7 514 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 CACYBPQ9HB71 228 aaKnown RBP13.74□□□□□ -0.21
NUP54-213ENST00000513352 FLRT3Q9NZU0 649 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 CNIH4Q9P003 139 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 CNOT11Q9UKZ1 510 aaKnown RBP13.74□□□□□ -0.21
NUP54-213ENST00000513352 MKLN1Q9UL63 735 aa13.74□□□□□ -0.21
NUP54-213ENST00000513352 CHCHD2Q9Y6H1 151 aaPredicted RBP13.74□□□□□ -0.21
NUP54-213ENST00000513352 B2RBV5 119 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 SCDO00767 359 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 ATXN7O15265 892 aaPredicted RBP13.73□□□□□ -0.21
NUP54-213ENST00000513352 NME2P1O60361 137 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 TNFRSF21O75509 655 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 CHRM4P08173 479 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 NME2P22392 152 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 SLC6A2P23975 617 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 EVI2BP34910 448 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 DCTP40126 519 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 MASP1P48740 699 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 RNF144AP50876 292 aaPredicted RBP13.73□□□□□ -0.21
NUP54-213ENST00000513352 SLC7A2P52569 658 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 CRISP3P54108 245 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 SLC25A3Q00325 362 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 KLRB1Q12918 225 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 NFATC3Q12968 1075 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 GNA13Q14344 377 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 RPS26P11Q5JNZ5 115 aaPredicted RBP13.73□□□□□ -0.21
NUP54-213ENST00000513352 Q6ZS92 163 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 HMGN2P46Q86SG4 172 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 IFNEQ86WN2 208 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 C10orf111Q8N326 155 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 GATSQ8NAP1 163 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 ZNF527Q8NB42 609 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 FAM98AQ8NCA5 519 aaKnown RBP13.73□□□□□ -0.21
NUP54-213ENST00000513352 TMEM19Q96HH6 336 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 TRNT1Q96Q11 434 aaKnown RBP13.73□□□□□ -0.21
NUP54-213ENST00000513352 DOHHQ9BU89 302 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 ZNF350Q9GZX5 532 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 KAT8Q9H7Z6 458 aaKnown RBP13.73□□□□□ -0.21
NUP54-213ENST00000513352 GALNT9Q9HCQ5 603 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 A4GALTQ9NPC4 353 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 NDE1Q9NXR1 346 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 ADA2Q9NZK5 511 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 CALML5Q9NZT1 146 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 GMEB1Q9Y692 573 aa13.73□□□□□ -0.21
NUP54-213ENST00000513352 A0A0G2JMM0 328 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 A0A1W2PPB8 328 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 A0A1W2PRS3 328 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 PRAMEF27A3QJZ7 478 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 C2orf72A6NCS6 295 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 KIR3DP1A8MWS1 328 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 KLRC4-KLRK1H3BQV0 150 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 PEX1O43933 1283 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 FCMRO60667 390 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 OXSR1O95747 527 aaPredicted RBP13.72□□□□□ -0.21
NUP54-213ENST00000513352 ARAFP10398 606 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 CNR1P21554 472 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 LCN1P31025 176 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 CASP3P42574 277 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 DNASE1L1P49184 302 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 MEOX1P50221 254 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 CDK6Q00534 326 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 PLGLB1Q02325 96 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 CHRNEQ04844 493 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 SCARB2Q14108 478 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 ZNF630Q2M218 657 aaPredicted RBP13.72□□□□□ -0.21
NUP54-213ENST00000513352 PLEKHN1Q494U1 663 aaPredicted RBP13.72□□□□□ -0.21
NUP54-213ENST00000513352 LRRC74BQ6ZQY2 392 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 ZNF619Q8N2I2 560 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 C11orf65Q8NCR3 313 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 FBXO27Q8NI29 283 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 GRHL3Q8TE85 626 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 SLC38A5Q8WUX1 472 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 PNPLA2Q96AD5 504 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 SCMH1Q96GD3 660 aa13.72□□□□□ -0.21
NUP54-213ENST00000513352 SECISBP2Q96T21 854 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms