RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 ZNF23P17027 643 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 DRD5P21918 477 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 YAP1P46937 504 aaKnown RBP17.2■□□□□ 0.34
CLN3-206ENST00000360019 FLYWCH1Q4VC44 716 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 DHRS4L2Q6PKH6 230 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 SLC29A4Q7RTT9 530 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 TMEM179BQ7Z7N9 219 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 PEX5LQ8IYB4 626 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 ZNF441Q8N8Z8 693 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 CATSPER1Q8NEC5 780 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 VANGL1Q8TAA9 524 aaPredicted RBP17.2■□□□□ 0.34
CLN3-206ENST00000360019 IFT52Q9Y366 437 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 HS3ST3B1Q9Y662 390 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 U3KQV3 271 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 M0R3H8 397 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 SYT5O00445 386 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 THBS1P07996 1170 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 RAB40ALP0C0E4 278 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 IL7RP16871 459 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 FOLR3P41439 243 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 AQP4P55087 323 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 SLC26A5P58743 744 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 DCAF7P61962 342 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 RPS18P62269 152 aaKnown RBP17.19■□□□□ 0.34
CLN3-206ENST00000360019 RNF4P78317 190 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 PCOLCEQ15113 449 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 ZNF836Q6ZNA1 936 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 CLIP4Q8N3C7 705 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 CBR4Q8N4T8 237 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 ESX1Q8N693 406 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 PMM1Q92871 262 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 G6PC3Q9BUM1 346 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 RLIMQ9NVW2 624 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 TCFL5Q9UL49 500 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 MAGED1Q9Y5V3 778 aaPredicted RBP17.19■□□□□ 0.34
CLN3-206ENST00000360019 ENPP4Q9Y6X5 453 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 CDC14CA4D256 554 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 SLC30A4O14863 429 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 DBIP07108 87 aaKnown RBP17.19■□□□□ 0.34
CLN3-206ENST00000360019 CD63P08962 238 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 ITGA2P17301 1181 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 ATP6V1C1P21283 382 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 DCTP40126 519 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 EEF1A1P68104 462 aaKnown RBP17.19■□□□□ 0.34
CLN3-206ENST00000360019 GABREP78334 506 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 NRF1Q16656 503 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLN3-206ENST00000360019 TBPL2Q6SJ96 375 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 ZBTB49Q6ZSB9 765 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 HS3ST5Q8IZT8 346 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 GALNT4Q8N4A0 578 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 EFHD2Q96C19 240 aaPredicted RBP17.19■□□□□ 0.34
CLN3-206ENST00000360019 VMP1Q96GC9 406 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 ZNF347Q96SE7 839 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 ZNF184Q99676 751 aaPredicted RBP17.19■□□□□ 0.34
CLN3-206ENST00000360019 C9orf16Q9BUW7 83 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 B3GNT4Q9C0J1 378 aa17.19■□□□□ 0.34
CLN3-206ENST00000360019 IGHV1-45A0A0A0MS14 117 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 NPIPB9F8W1W9 429 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 DPM1O60762 260 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 DNAJB5O75953 348 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 COX6A1P12074 109 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 MMP11P24347 488 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 RRM2P31350 389 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 RNF144AP50876 292 aaPredicted RBP17.18■□□□□ 0.34
CLN3-206ENST00000360019 NR0B1P51843 470 aaKnown RBP17.18■□□□□ 0.34
CLN3-206ENST00000360019 LARS2Q15031 903 aaKnown RBP17.18■□□□□ 0.34
CLN3-206ENST00000360019 HLA-DQA1Q5Y7H0 255 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 TCTN3Q6NUS6 607 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 HSDL2Q6YN16 418 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 ZNF605Q86T29 641 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 NLGN4XQ8N0W4 816 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 C17orf47Q8NEP4 570 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 NLGN4YQ8NFZ3 816 aaPredicted RBP17.18■□□□□ 0.34
CLN3-206ENST00000360019 OR6T1Q8NGN1 323 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 ADAMTS14Q8WXS8 1223 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 ARHGDIGQ99819 225 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 TRIM45Q9H8W5 580 aaPredicted RBP17.18■□□□□ 0.34
CLN3-206ENST00000360019 POLR1BQ9H9Y6 1135 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 LIN28AQ9H9Z2 209 aaKnown RBP17.18■□□□□ 0.34
CLN3-206ENST00000360019 CNOT11Q9UKZ1 510 aaKnown RBP17.18■□□□□ 0.34
CLN3-206ENST00000360019 ZNF232Q9UNY5 417 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 PCDHGA10Q9Y5H3 936 aa17.18■□□□□ 0.34
CLN3-206ENST00000360019 TRBV11-1A0A0K0K1C0 115 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 FFAR1O14842 300 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 TO15178 435 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 FRS3O43559 492 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 E2F6O75461 281 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 NID1P14543 1247 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 FUT4P22083 530 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 STAT5AP42229 794 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 NPTX1Q15818 432 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 DECR1Q16698 335 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 LIN52Q52LA3 116 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 PPP4R4Q6NUP7 873 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 KIRREL2Q6UWL6 708 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 DEF8Q6ZN54 512 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 DNAJC9Q8WXX5 260 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 ZNF700Q9H0M5 742 aa17.17■□□□□ 0.34
CLN3-206ENST00000360019 CACYBPQ9HB71 228 aaKnown RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms