RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 VRK2Q86Y07 508 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 CACTIN-AS1Q8N1I8 211 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 ZNF619Q8N2I2 560 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 EME1Q96AY2 570 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 VPS50Q96JG6 964 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 ZNF354BQ96LW1 612 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 WFDC6Q9BQY6 131 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 BDH2Q9BUT1 245 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 KLHL4Q9C0H6 718 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 MTHFD2LQ9H903 347 aaPredicted RBP17.24■□□□□ 0.35
CLN3-206ENST00000360019 NDUFAF4Q9P032 175 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 COPS7AQ9UBW8 275 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 OAZ3Q9UMX2 235 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 CFL2Q9Y281 166 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 AK5Q9Y6K8 562 aa17.24■□□□□ 0.35
CLN3-206ENST00000360019 SAC3D1A6NKF1 404 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 TTC36A6NLP5 189 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 PEX1O43933 1283 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 TNFSF15O95150 251 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 CCNYL3P0C7X3 344 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 PIGAP37287 484 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 AP1ARQ63HQ0 302 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 TMPRSS12Q86WS5 348 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 APCDD1LQ8NCL9 501 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 B3GNT7Q8NFL0 401 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 OR4D11Q8NGI4 311 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 OR2Y1Q8NGV0 311 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 PROX1Q92786 737 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 ADIPOR1Q96A54 375 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 LMF1Q96S06 567 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 KCNE5Q9UJ90 142 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 ZNF223Q9UK11 482 aaPredicted RBP17.23■□□□□ 0.35
CLN3-206ENST00000360019 PPIEQ9UNP9 301 aaKnown RBP17.23■□□□□ 0.35
CLN3-206ENST00000360019 CHST2Q9Y4C5 530 aa17.23■□□□□ 0.35
CLN3-206ENST00000360019 NINQ8N4C6 2090 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 NPIPA5A0A0B4J1W7 369 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 NPIPA7E9PJI5 369 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 NPIPA8P0DM63 369 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 PPICP45877 212 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 RFX3P48380 749 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 IST1P53990 364 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 MAPK14Q16539 360 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 ZNF311Q5JNZ3 666 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 OR52P1PQ8NH57 321 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 CT55Q8WUE5 264 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 TMBIM1Q969X1 311 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 GAL3ST4Q96RP7 486 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 SEMA4CQ9C0C4 833 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 AMBRA1Q9C0C7 1298 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 NXF5Q9H1B4 397 aaKnown RBP17.22■□□□□ 0.35
CLN3-206ENST00000360019 THSD1Q9NS62 852 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 VNN3Q9NY84 501 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 C19orf25Q9UFG5 118 aaPredicted RBP17.22■□□□□ 0.35
CLN3-206ENST00000360019 CBLCQ9ULV8 474 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 DTNAQ9Y4J8 743 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 DCHS1Q96JQ0 3298 aa17.22■□□□□ 0.35
CLN3-206ENST00000360019 LOC102723996A0A087X1L8 192 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 C2orf92A0A1B0GVN3 265 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 AGAP5A6NIR3 686 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 PEX12O00623 359 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 ACOX3O15254 700 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 SEC24DO94855 1032 aaPredicted RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 ZNF26P17031 533 aaPredicted RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 RPS4Y1P22090 263 aaKnown RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 NOVA1P51513 510 aaKnown RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 KCNC4Q03721 635 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 PPP1R8Q12972 351 aaKnown RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 IZUMO2Q6UXV1 221 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 LACC1Q8IV20 430 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 BCORP1Q8N888 145 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 LPAR4Q99677 370 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 PINK1Q9BXM7 581 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 WWTR1Q9GZV5 400 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 COQ10BQ9H8M1 238 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 POLE3Q9NRF9 147 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 OR10H1Q9Y4A9 318 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 FRG2CA6NGY1 282 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 CLDN24A6NM45 220 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 OR6C76A6NM76 312 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 PDLIM1O00151 329 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 GNGT2O14610 69 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 LGI1O95970 557 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 TCN2P20062 427 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 PRKAR1BP31321 381 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 OR2T5Q6IEZ7 315 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 CARM1Q86X55 608 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 RBM45Q8IUH3 476 aaKnown RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 OR2T29Q8NH02 315 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 LCORQ96JN0 433 aaPredicted RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 ZNF300Q96RE9 604 aaPredicted RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 SLC29A1Q99808 456 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 NRSN2Q9GZP1 204 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 VCX3BQ9H321 246 aa17.21■□□□□ 0.35
CLN3-206ENST00000360019 ZNF443Q9Y2A4 671 aaPredicted RBP17.21■□□□□ 0.35
CLN3-206ENST00000360019 J3KTA2 159 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 SOCS2O14508 198 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 SEMA7AO75326 666 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 UGT2B17O75795 530 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 IFNW1P05000 195 aa17.2■□□□□ 0.34
CLN3-206ENST00000360019 GUSBP08236 651 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms