RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 MYH6P13533 1939 aa2.46□□□□□ -2.02
SCFD1-219ENST00000556413 PTPRZ1P23471 2315 aaPredicted RBP2.46□□□□□ -2.02
SCFD1-219ENST00000556413 ASPMQ8IZT6 3477 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 CACNA1AO00555 2505 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 SPEGQ15772 3267 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 LOXHD1Q8IVV2 1947 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 IGKV6-21A0A0C4DH24 114 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 PP2D1A8MPX8 630 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 ANHXE9PGG2 379 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 HCRTO43612 131 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 JAK2O60674 1132 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 PRAMEF12O95522 483 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 UMPSP11172 480 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 BDNFP23560 247 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 ACAT1P24752 427 aaKnown RBP2.45□□□□□ -2.02
SCFD1-219ENST00000556413 CCNE1P24864 410 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 NMT1P30419 496 aaKnown RBP2.45□□□□□ -2.02
SCFD1-219ENST00000556413 GDI1P31150 447 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 YWHABP31946 246 aaKnown RBP2.45□□□□□ -2.02
SCFD1-219ENST00000556413 HSPA4P34932 840 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 OR1D2P34982 312 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 HSD17B3P37058 310 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 SLC26A2P50443 739 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 PSMC5P62195 406 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 BTG1P62324 171 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 ROR1Q01973 937 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 TWF1Q12792 350 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 PLD1Q13393 1074 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 PON2Q15165 354 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 HYAL4Q2M3T9 481 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 FAM78AQ5JUQ0 283 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 N4BP2L1Q5TBK1 243 aaPredicted RBP2.45□□□□□ -2.02
SCFD1-219ENST00000556413 SDHAF4Q5VUM1 108 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 SLC30A6Q6NXT4 461 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 CD300LGQ6UXG3 332 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 PPP1R21Q6ZMI0 780 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 NIPA1Q7RTP0 329 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 ZNF410Q86VK4 478 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 LRRC49Q8IUZ0 686 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 BLIDQ8IZY5 108 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 DEFB119Q8N690 84 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 Q8NFD4 153 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 VPS33AQ96AX1 596 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 CCDC43Q96MW1 224 aaKnown RBP2.45□□□□□ -2.02
SCFD1-219ENST00000556413 GDAP1L1Q96MZ0 367 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 PLIN2Q99541 437 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 TMEM175Q9BSA9 504 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 FN3KQ9H479 309 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 LMAN1LQ9HAT1 526 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 CUTCQ9NTM9 273 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 NKIRAS2Q9NYR9 191 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 ADAM28Q9UKQ2 775 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 CDH7Q9ULB5 785 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 DENND4AQ7Z401 1863 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 C2orf16Q68DN1 1984 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 WDFY3Q8IZQ1 3526 aa2.45□□□□□ -2.02
SCFD1-219ENST00000556413 GVINP1Q7Z2Y8 2422 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 SF3B1O75533 1304 aaKnown RBP eCLIP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 SPTBN2O15020 2390 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 SPAARA0A1B0GVQ0 90 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 E7ENQ6 273 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 PRRG1O14668 218 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 ZNF253O75346 499 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 B3GAT3O94766 335 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 SLITRK3O94933 977 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 CTDNEP1O95476 244 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 PENKP01210 267 aaPredicted RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 TDGF1P13385 188 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 BCKDHBP21953 392 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 SFNP31947 248 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 SFTPDP35247 375 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 QARSP47897 775 aaKnown RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 RGS7P49802 495 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 NOVA1P51513 510 aaKnown RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 CLDN6P56747 220 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 STARD6P59095 220 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 PTENP60484 403 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 CACNG1Q06432 222 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 ZNF273Q14593 569 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 LTB4RQ15722 352 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 KNOP1Q1ED39 458 aaKnown RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 KRT80Q6KB66 452 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 BLOC1S2Q6QNY1 142 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 ENPP7Q6UWV6 458 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 KRT74Q7RTS7 529 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 NRARPQ7Z6K4 114 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 DEFB124Q8NES8 71 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 CCDC148Q8NFR7 591 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 FAM3CQ92520 227 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 PGM2Q96G03 612 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 ZMAT2Q96NC0 199 aaKnown RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 EDEM2Q9BV94 578 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 GTPBP2Q9BX10 602 aaKnown RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 DHX33Q9H6R0 707 aaKnown RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 RAB9BQ9NP90 201 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 KCNMB3Q9NPA1 279 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 PRMT8Q9NR22 394 aaPredicted RBP2.44□□□□□ -2.02
SCFD1-219ENST00000556413 PKD2L2Q9NZM6 624 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 ADAM22Q9P0K1 906 aa2.44□□□□□ -2.02
SCFD1-219ENST00000556413 CCL26Q9Y258 94 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms