RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 OR6B1O95007 311 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 KRT16P08779 473 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 ABCD3P28288 659 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 CASRP41180 1078 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 ARG2P78540 354 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 STX5Q13190 355 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 DUSP5Q16690 384 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 EXOSC6Q5RKV6 272 aaKnown RBP27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 DLEU7Q6UYE1 221 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 RNF130Q86XS8 419 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 FITM2Q8N6M3 262 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 EXD3Q8N9H8 876 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 OR5D16Q8NGK9 328 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 GPR151Q8TDV0 419 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 RCN3Q96D15 328 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 TPT1P8Q9HAU6 139 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 Q9N2J8 555 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 MAP10Q9P2G4 905 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 LHX6Q9UPM6 363 aa27.34■■□□□ 1.97
LIMCH1-211ENST00000509638 TRBV5-3A0A0A0MS03 114 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 TTC36A6NLP5 189 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 TO15178 435 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 NKX2-2O95096 273 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 ALOX5P09917 674 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 GABRA3P34903 492 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 TRHRP34981 398 aaPredicted RBP27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 CD97P48960 835 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 PLCXD2Q0VAA5 305 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 TUBA3CQ13748 450 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 TRMT5Q32P41 509 aaKnown RBP27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 LACTB2Q53H82 288 aaPredicted RBP27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 TUBA3EQ6PEY2 450 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 SLC15A4Q8N697 577 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 OR4N2Q8NGD1 307 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 DNAJB8Q8NHS0 232 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 CMTM5Q96DZ9 223 aa27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 UTP23Q9BRU9 249 aaKnown RBP27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 ZNF71Q9NQZ8 489 aaPredicted RBP27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 NIPSNAP3AQ9UFN0 247 aaPredicted RBP27.33■■□□□ 1.97
LIMCH1-211ENST00000509638 MATN1P21941 496 aa27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 MAN2A2P49641 1150 aa27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 OC90Q02509 493 aaPredicted RBP27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 FAM91A1Q658Y4 838 aa27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 TNFAIP8L2Q6P589 184 aaPredicted RBP27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 COX18Q8N8Q8 333 aa27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 PIK3R3Q92569 461 aa27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 CSAG2Q9Y5P2 127 aa27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 SPENQ96T58 3664 aaKnown RBP27.32■■□□□ 1.96
LIMCH1-211ENST00000509638 OR5H15A6NDH6 313 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 A8MVJ9 347 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 KRT75O95678 551 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 PRDX6P30041 224 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 CYB561P49447 251 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 KHKP50053 298 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 HLCSP50747 726 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 OPN5Q6U736 354 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 PCSK4Q6UW60 755 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 LYPD8Q6UX82 237 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 IGFL3Q6UXB1 125 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 ASB18Q6ZVZ8 466 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 SLC34A3Q8N130 599 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 MIPOL1Q8TD10 442 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 ADAMTS15Q8TE58 950 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 CDS1Q92903 461 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 TMBIM1Q969X1 311 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 SPACA9Q96E40 222 aaPredicted RBP27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 OMA1Q96E52 524 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 OR7D2Q96RA2 312 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 STACQ99469 402 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 OR51I1Q9H343 314 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 DUSP22Q9NRW4 184 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 HPF1Q9NWY4 346 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 NPFFR2Q9Y5X5 522 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 SPTA1P02549 2419 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 GXYLT2A0PJZ3 443 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 FBXO45P0C2W1 286 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 TMED10P49755 219 aaKnown RBP27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 PSPHP78330 225 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 COX20Q5RI15 118 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 DDX59Q5T1V6 619 aaKnown RBP eCLIP27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 IL20RBQ6UXL0 311 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 CYP4Z2PQ8N1L4 340 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 PCYOX1LQ8NBM8 494 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 RMND5BQ96G75 393 aaPredicted RBP27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 PIGUQ9H490 435 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 CBLCQ9ULV8 474 aa27.31■■□□□ 1.96
LIMCH1-211ENST00000509638 CLIC1O00299 241 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 CD96P40200 585 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 CBX1P83916 185 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 CAPRIN1Q14444 709 aaKnown RBP27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 CYP27C1Q4G0S4 372 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 ZADH2Q8N4Q0 377 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 HAS2Q92819 552 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 CGREF1Q99674 301 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 SLC39A3Q9BRY0 314 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 LRFN1Q9P244 771 aa27.3■■□□□ 1.96
LIMCH1-211ENST00000509638 KALRNO60229 2985 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 FXYD1O00168 92 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 MVDP53602 400 aa27.29■■□□□ 1.96
LIMCH1-211ENST00000509638 LY6DQ14210 128 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 87.7 ms