RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ZNF395	Q9H8N7	513 aa	Predicted RBP	10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	LRTM1	Q9HBL6	345 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	TIMMDC1	Q9NPL8	285 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	MIEF1	Q9NQG6	463 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	ZDHHC2	Q9UIJ5	367 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	NPIPA1	Q9UND3	350 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	ENTPD4	Q9Y227	616 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	OSGIN2	Q9Y236	505 aa		10.25	□□□□□ -0.77
DDB1-222	ENST00000543627	ATP6AP2	A0A1C7CYW4	349 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	TMEM200C	A6NKL6	621 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	PIP5K1B	O14986	540 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	ITM2A	O43736	263 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	PEX11A	O75192	247 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	ATP6AP2	O75787	350 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	RSL1D1	O76021	490 aa	Known RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	AGFG2	O95081	481 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	UNC5C	O95185	931 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	ZWINT	O95229	277 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	CBX6	O95503	412 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	DRD2	P14416	443 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	BGN	P21810	368 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	MEOX1	P50221	254 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	MAGOH	P61326	146 aa	Known RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	PLGLB1	Q02325	96 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	DUSP2	Q05923	314 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	ZNF763	Q0D2J5	394 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	CASP8	Q14790	479 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	EXOSC7	Q15024	291 aa	Known RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	NNAT	Q16517	81 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	KANK2	Q63ZY3	851 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	GFRAL	Q6UXV0	394 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	TMEM64	Q6YI46	380 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	TRIM46	Q7Z4K8	759 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	MDGA2	Q7Z553	956 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	TICAM1	Q8IUC6	712 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	SULF2	Q8IWU5	870 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	LRRC25	Q8N386	305 aa	Predicted RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	CPSF7	Q8N684	471 aa	Known RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	FAM13C	Q8NE31	585 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	SLC22A8	Q8TCC7	542 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	KAT2A	Q92830	837 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	CNRIP1	Q96F85	164 aa	Predicted RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	PGM2	Q96G03	612 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	OR10A5	Q9H207	317 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	ANKRA2	Q9H9E1	313 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	CXorf21	Q9HAI6	301 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	C1orf109	Q9NX04	203 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	SEC14L3	Q9UDX4	400 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	GIMAP2	Q9UG22	337 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	BAIAP2L1	Q9UHR4	511 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	SH3BGRL2	Q9UJC5	107 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	CES1P1	Q9UKY3	287 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	PPIE	Q9UNP9	301 aa	Known RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	DNAJC15	Q9Y5T4	150 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	SPEN	Q96T58	3664 aa	Known RBP	10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	NBAS	A2RRP1	2371 aa		10.24	□□□□□ -0.77
DDB1-222	ENST00000543627	CPAMD8	Q8IZJ3	1885 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	SERTM1	A2A2V5	107 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	KLRC4-KLRK1	H3BQV0	150 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	TM9SF1	O15321	606 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	ZNHIT1	O43257	154 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	PEX1	O43933	1283 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	CDC40	O60508	579 aa	Known RBP eCLIP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	ZNF354A	O60765	605 aa	Predicted RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	NME6	O75414	186 aa	Predicted RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627		P04436	131 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	JUN	P05412	331 aa	Known RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	EDN3	P14138	238 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	MST1	P26927	711 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	TRHR	P34981	398 aa	Predicted RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	ETV4	P43268	484 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	NCBP2	P52298	156 aa	Known RBP eCLIP	10.23	□□□□□ -0.77	4e-6	■□□□□ 8.1
DDB1-222	ENST00000543627	SLC37A1	P57057	533 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	ABCE1	P61221	599 aa	Known RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	MRPS35	P82673	323 aa	Known RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	STX3	Q13277	289 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	MPP2	Q14168	576 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	PDCD2	Q16342	344 aa	Predicted RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	SPRED3	Q2MJR0	410 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	RFTN2	Q52LD8	501 aa	Predicted RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	TRMT12	Q53H54	448 aa	Known RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	PIGG	Q5H8A4	983 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	ANKRD26P1	Q6NSI1	321 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	OPN5	Q6U736	354 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627		Q6ZSR9	355 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	PRR22	Q8IZ63	422 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	VWA5B2	Q8N398	1253 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	OR52R1	Q8NGF1	315 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	OR9A2	Q8NGT5	310 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	OR2T11	Q8NH01	316 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	DNAJB8	Q8NHS0	232 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	SCMH1	Q96GD3	660 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	EGLN2	Q96KS0	407 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	JSRP1	Q96MG2	331 aa	Predicted RBP	10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	TSSK3	Q96PN8	268 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	WWTR1	Q9GZV5	400 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	TUBB1	Q9H4B7	451 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	SLC35C2	Q9NQQ7	365 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	NKIRAS1	Q9NYS0	192 aa		10.23	□□□□□ -0.77
DDB1-222	ENST00000543627	SH3BP4	Q9P0V3	963 aa		10.23	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms