RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	SEC18	P18759	758 aa	Known RBP	6.12	□□□□□ -1.43
NUP1	YOR098C	CAJ1	P39101	391 aa		6.12	□□□□□ -1.43
NUP1	YOR098C	RAT1	Q02792	1006 aa	Known RBP	6.12	□□□□□ -1.43
NUP1	YOR098C	YDR306C	Q06640	478 aa		6.12	□□□□□ -1.43
NUP1	YOR098C	RXT2	P38255	430 aa		6.11	□□□□□ -1.43
NUP1	YOR098C	MNN11	P46985	422 aa	Known RBP	6.11	□□□□□ -1.43
NUP1	YOR098C	HAP5	Q02516	242 aa		6.11	□□□□□ -1.43
NUP1	YOR098C	FRK1	Q03002	865 aa	Predicted RBP	6.11	□□□□□ -1.43
NUP1	YOR098C	ECM38	Q05902	660 aa	Predicted RBP	6.11	□□□□□ -1.43
NUP1	YOR098C	NBA1	Q08229	501 aa	Known RBP	6.11	□□□□□ -1.43
NUP1	YOR098C	SPO21	Q12411	609 aa		6.11	□□□□□ -1.43
NUP1	YOR098C	CFT1	Q06632	1357 aa	Known RBP	6.11	□□□□□ -1.43
NUP1	YOR098C	HVG1	P0CE11	249 aa		6.11	□□□□□ -1.43
NUP1	YOR098C	COX11	P19516	300 aa	Known RBP	6.11	□□□□□ -1.43
NUP1	YOR098C	SYP1	P25623	870 aa	Known RBP	6.11	□□□□□ -1.43
NUP1	YOR098C	YPR015C	Q12531	247 aa		6.11	□□□□□ -1.43
NUP1	YOR098C	SPO16	P17122	198 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	YBR287W	P38355	427 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	GPD2	P41911	440 aa	Known RBP	6.1	□□□□□ -1.43
NUP1	YOR098C	AIM14	P53109	570 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	PKH1	Q03407	766 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	YOL114C	Q12322	202 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	PAN1	P32521	1480 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	DHR2	P36009	735 aa	Predicted RBP	6.1	□□□□□ -1.43
NUP1	YOR098C	PSY4	P38193	441 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	UPF3	P48412	387 aa	Known RBP	6.1	□□□□□ -1.43
NUP1	YOR098C	NSE5	Q03718	556 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	SMY2	P32909	740 aa	Known RBP	6.1	□□□□□ -1.43
NUP1	YOR098C	SAS3	P34218	831 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	MUD2	P36084	527 aa	Known RBP	6.1	□□□□□ -1.43
NUP1	YOR098C	MCM7	P38132	845 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	MOT3	P54785	490 aa	Known RBP	6.1	□□□□□ -1.43
NUP1	YOR098C	BRE4	Q07660	1125 aa		6.1	□□□□□ -1.43
NUP1	YOR098C	RKR1	Q04781	1562 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	GFA1	P14742	717 aa	Known RBP	6.09	□□□□□ -1.43
NUP1	YOR098C	RER1	P25560	188 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	KRR1	P25586	316 aa	Predicted RBP	6.09	□□□□□ -1.43
NUP1	YOR098C	CEG1	Q01159	459 aa	Predicted RBP	6.09	□□□□□ -1.43
NUP1	YOR098C	PRP3	Q03338	469 aa	Predicted RBP	6.09	□□□□□ -1.43
NUP1	YOR098C	YDR286C	Q05530	114 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	HIM1	Q06674	414 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	DPH6	Q12429	685 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	SNQ2	P32568	1501 aa	Known RBP	6.09	□□□□□ -1.43
NUP1	YOR098C	MYO4	P32492	1471 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	BI4	P03879	638 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	SER1	P33330	395 aa	Known RBP	6.09	□□□□□ -1.43
NUP1	YOR098C	ERT1	P38140	529 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	UBS1	P38290	277 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	GUS1	P46655	708 aa	Known RBP RIP-Chip data	6.09	□□□□□ -1.43	not detected
NUP1	YOR098C	BTN2	P53286	410 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	RSC58	Q07979	502 aa		6.09	□□□□□ -1.43
NUP1	YOR098C	YOR1	P53049	1477 aa		6.09	□□□□□ -1.44
NUP1	YOR098C	RPP2B	P02400	110 aa	Known RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	RPS31	P05759	152 aa	Known RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	HMG1	P12683	1054 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	CDC60	P26637	1090 aa	Known RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	AAR2	P32357	355 aa	Predicted RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	PXA2	P34230	853 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	ECM9	Q02202	377 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	YDR338C	Q05497	695 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	ATG33	Q06485	197 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	AAC3	P18238	307 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	DBP5	P20449	482 aa	Known RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	PET309	P32522	965 aa	Predicted RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	YIL165C	P40446	119 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	GRX3	Q03835	250 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	ARA2	Q04212	335 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	MRP7	P12687	371 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	AAD3	P25612	363 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	CCT3	P39077	534 aa	Known RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	CAF16	P43569	289 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	YGR153W	P48238	217 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	YAP1802	P53309	568 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	SPO71	Q03868	1245 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	PUS5	Q06244	254 aa		6.08	□□□□□ -1.44
NUP1	YOR098C	YCF1	P39109	1515 aa	Known RBP	6.08	□□□□□ -1.44
NUP1	YOR098C	YPK9	Q12697	1472 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	SIS1	P25294	352 aa	Known RBP	6.07	□□□□□ -1.44
NUP1	YOR098C	DPH2	P32461	534 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	GYP8	P43570	497 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	CCT8	P47079	568 aa	Known RBP	6.07	□□□□□ -1.44
NUP1	YOR098C	BLS1	Q06071	122 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	EST2	Q06163	884 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	PEX15	Q08215	383 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	EXO5	P38289	585 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	SIT1	P39980	628 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	PCL10	P53124	433 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	SLD3	P53135	668 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	TLG1	Q03322	224 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	VTI1	Q04338	217 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	YKU80	Q04437	629 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	TDA9	Q04545	1251 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	YDR344C	Q05510	147 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	SCM3	Q12334	223 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	HSH49	Q99181	213 aa	Predicted RBP	6.07	□□□□□ -1.44
NUP1	YOR098C	TSC11	P40061	1430 aa		6.07	□□□□□ -1.44
NUP1	YOR098C	SHM1	P37292	490 aa	Predicted RBP	6.06	□□□□□ -1.44
NUP1	YOR098C	MPH1	P40562	993 aa		6.06	□□□□□ -1.44
NUP1	YOR098C	ATP22	P50273	684 aa	Predicted RBP	6.06	□□□□□ -1.44
NUP1	YOR098C	RGA2	Q06407	1009 aa		6.06	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 59.3 ms