RNA–Protein interactions for RNA: YMR123W

PKR1, Transcript of V-ATPase assembly factor, yeast

Gene PKR1, Length 369 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PKR1	YMR123W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	3.92	□□□□□ -1.78	RIP-Chip
PKR1	YMR123W	SIT1	P39980	628 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	YER158C	P40095	573 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	TPO2	P53283	614 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	ENA2	Q01896	1091 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	YLR224W	Q05947	369 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	WRS1	Q12109	432 aa	Known RBP	3.92	□□□□□ -1.78
PKR1	YMR123W	ENA5	Q12691	1091 aa		3.92	□□□□□ -1.78
PKR1	YMR123W	SPE1	P08432	466 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	PPH3	P32345	308 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	SCT1	P32784	759 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	SRP101	P32916	621 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	SHM2	P37291	469 aa	Known RBP	3.91	□□□□□ -1.78
PKR1	YMR123W	YBR184W	P38299	523 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	PFD1	P46988	109 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	GCV2	P49095	1034 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	MNN10	P50108	393 aa	Known RBP	3.91	□□□□□ -1.78
PKR1	YMR123W	SFB2	P53953	876 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	NAN1	Q02931	896 aa	Known RBP	3.91	□□□□□ -1.78
PKR1	YMR123W	TMA10	Q06177	86 aa		3.91	□□□□□ -1.78
PKR1	YMR123W	GRX1	P25373	110 aa	Known RBP	3.9	□□□□□ -1.79
PKR1	YMR123W	CDC48	P25694	835 aa	Known RBP	3.9	□□□□□ -1.79
PKR1	YMR123W	AAR2	P32357	355 aa	Predicted RBP	3.9	□□□□□ -1.79
PKR1	YMR123W	AFR1	P33304	620 aa		3.9	□□□□□ -1.79
PKR1	YMR123W	TSL1	P38427	1098 aa	Known RBP	3.9	□□□□□ -1.79
PKR1	YMR123W	CCC2	P38995	1004 aa		3.9	□□□□□ -1.79
PKR1	YMR123W	CHA4	P43634	648 aa		3.9	□□□□□ -1.79
PKR1	YMR123W	PSP2	P50109	593 aa	Known RBP	3.9	□□□□□ -1.79
PKR1	YMR123W	YKE2	P52553	114 aa		3.9	□□□□□ -1.79
PKR1	YMR123W	FMP25	Q08023	583 aa		3.9	□□□□□ -1.79
PKR1	YMR123W	ADE8	P04161	214 aa		3.89	□□□□□ -1.79
PKR1	YMR123W	NPP1	P25353	742 aa		3.89	□□□□□ -1.79
PKR1	YMR123W	HBS1	P32769	611 aa	Known RBP	3.89	□□□□□ -1.79
PKR1	YMR123W	ATG19	P35193	415 aa		3.89	□□□□□ -1.79
PKR1	YMR123W	PLB1	P39105	664 aa		3.89	□□□□□ -1.79
PKR1	YMR123W	URM1	P40554	99 aa	Predicted RBP	3.89	□□□□□ -1.79
PKR1	YMR123W	MCM6	P53091	1017 aa	Known RBP	3.89	□□□□□ -1.79
PKR1	YMR123W	UTP8	P53276	713 aa	Known RBP	3.89	□□□□□ -1.79
PKR1	YMR123W	BUL2	Q03758	920 aa	Known RBP	3.89	□□□□□ -1.79
PKR1	YMR123W	GSF2	Q04697	403 aa	Known RBP	3.89	□□□□□ -1.79
PKR1	YMR123W	YJL049W	P47048	450 aa		3.88	□□□□□ -1.79
PKR1	YMR123W	RPL8B	P29453	256 aa	Known RBP	3.87	□□□□□ -1.79
PKR1	YMR123W	DCG1	P32460	244 aa		3.87	□□□□□ -1.79
PKR1	YMR123W	YRO2	P38079	344 aa		3.87	□□□□□ -1.79
PKR1	YMR123W	RAI1	P53063	387 aa	Known RBP	3.87	□□□□□ -1.79
PKR1	YMR123W	ERP6	P53198	216 aa		3.87	□□□□□ -1.79
PKR1	YMR123W	LCD1	Q04377	747 aa		3.87	□□□□□ -1.79
PKR1	YMR123W	YPR196W	Q06595	470 aa		3.87	□□□□□ -1.79
PKR1	YMR123W	SPO75	Q07798	868 aa		3.87	□□□□□ -1.79
PKR1	YMR123W	PMA1	P05030	918 aa	Known RBP	3.86	□□□□□ -1.79
PKR1	YMR123W	HCM1	P25364	564 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	CDC11	P32458	415 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	TRM2	P33753	639 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	ALR2	P43553	858 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	IOC3	P43596	787 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	CCM1	P48237	864 aa	Predicted RBP	3.86	□□□□□ -1.79
PKR1	YMR123W	EXG2	P52911	562 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	NCS6	P53088	359 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	KCS1	Q12494	1050 aa		3.86	□□□□□ -1.79
PKR1	YMR123W	TUB2	P02557	457 aa	Known RBP	3.85	□□□□□ -1.79
PKR1	YMR123W	NOT3	P06102	836 aa	Known RBP	3.85	□□□□□ -1.79
PKR1	YMR123W	RAD4	P14736	754 aa		3.85	□□□□□ -1.79
PKR1	YMR123W	STE13	P33894	931 aa		3.85	□□□□□ -1.79
PKR1	YMR123W	TOK1	P40310	691 aa		3.85	□□□□□ -1.79
PKR1	YMR123W	EAF1	Q06337	982 aa		3.85	□□□□□ -1.79
PKR1	YMR123W	URN1	Q06525	465 aa	Known RBP	3.85	□□□□□ -1.79
PKR1	YMR123W	NTO1	Q12311	748 aa		3.85	□□□□□ -1.79
PKR1	YMR123W	NPC2	Q12408	173 aa		3.85	□□□□□ -1.79
PKR1	YMR123W	PMI40	P29952	429 aa	Known RBP	3.84	□□□□□ -1.79
PKR1	YMR123W	REC104	P33323	182 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	PET10	P36139	283 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	3.84	□□□□□ -1.79	RIP-Chip
PKR1	YMR123W	UBX5	Q06682	500 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	WHI4	Q07655	649 aa	Known RBP	3.84	□□□□□ -1.79
PKR1	YMR123W	ENB1	Q08299	606 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	GUP2	Q08929	609 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	UPC2	Q12151	913 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	OSH2	Q12451	1283 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	HBN1	Q96VH4	193 aa		3.84	□□□□□ -1.79
PKR1	YMR123W	HSP60	P19882	572 aa	Known RBP	3.83	□□□□□ -1.8
PKR1	YMR123W	ARE1	P25628	610 aa		3.83	□□□□□ -1.8
PKR1	YMR123W	STE14	P32584	239 aa		3.83	□□□□□ -1.8
PKR1	YMR123W	ERT1	P38140	529 aa		3.83	□□□□□ -1.8
PKR1	YMR123W	PUS9	Q12069	462 aa		3.83	□□□□□ -1.8
PKR1	YMR123W	CIT1	P00890	479 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	FBP1	P09201	348 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	MSD1	P15179	658 aa	Known RBP	3.82	□□□□□ -1.8
PKR1	YMR123W	SED4	P25365	1065 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	DEF1	P35732	738 aa	Known RBP	3.82	□□□□□ -1.8
PKR1	YMR123W	YBR284W	P38150	797 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	YHR020W	P38708	688 aa	Known RBP	3.82	□□□□□ -1.8
PKR1	YMR123W	TIM54	P47045	478 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	PHO23	P50947	330 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	VPS30	Q02948	557 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	TAF8	Q03750	510 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	YPR071W	Q12346	211 aa		3.82	□□□□□ -1.8
PKR1	YMR123W	PFK1	P16861	987 aa	Known RBP	3.81	□□□□□ -1.8
PKR1	YMR123W	NNF1	P47149	201 aa		3.81	□□□□□ -1.8
PKR1	YMR123W	MSE1	P48525	536 aa		3.81	□□□□□ -1.8
PKR1	YMR123W	MPH2	P0CD99	609 aa		3.8	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 45.6 ms