RNA–Protein interactions for RNA: YKL184W

SPE1, Transcript of Ornithine decarboxylase, yeast

Gene SPE1, Length 1,401 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPE1	YKL184W	HMI1	Q12039	706 aa		3.95	□□□□□ -1.78
SPE1	YKL184W	CDC12	P32468	407 aa	Known RBP	3.94	□□□□□ -1.78
SPE1	YKL184W	YKL069W	P36088	180 aa		3.94	□□□□□ -1.78
SPE1	YKL184W	IOC3	P43596	787 aa		3.94	□□□□□ -1.78
SPE1	YKL184W	GSF2	Q04697	403 aa	Known RBP	3.94	□□□□□ -1.78
SPE1	YKL184W	YLR224W	Q05947	369 aa		3.94	□□□□□ -1.78
SPE1	YKL184W	SPO75	Q07798	868 aa		3.94	□□□□□ -1.78
SPE1	YKL184W	TUB2	P02557	457 aa	Known RBP	3.93	□□□□□ -1.78
SPE1	YKL184W	HIS5	P07172	385 aa		3.93	□□□□□ -1.78
SPE1	YKL184W	CTS1	P29029	562 aa		3.93	□□□□□ -1.78
SPE1	YKL184W	CDC11	P32458	415 aa		3.93	□□□□□ -1.78
SPE1	YKL184W	SRP101	P32916	621 aa		3.93	□□□□□ -1.78
SPE1	YKL184W	GIC1	P38785	314 aa		3.93	□□□□□ -1.78
SPE1	YKL184W	SPF1	P39986	1215 aa	Known RBP	3.93	□□□□□ -1.78
SPE1	YKL184W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	3.93	□□□□□ -1.78	not detected
SPE1	YKL184W	TMA10	Q06177	86 aa		3.93	□□□□□ -1.78
SPE1	YKL184W	CDC6	P09119	513 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	HCM1	P25364	564 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	GRX1	P25373	110 aa	Known RBP	3.92	□□□□□ -1.78
SPE1	YKL184W	LST4	P34239	828 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	YKR078W	P36158	585 aa	Known RBP	3.92	□□□□□ -1.78
SPE1	YKL184W	YRO2	P38079	344 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	YER158C	P40095	573 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	GYP7	P48365	746 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	VPS30	Q02948	557 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	ADY3	Q07732	790 aa		3.92	□□□□□ -1.78
SPE1	YKL184W	CDC48	P25694	835 aa	Known RBP	3.91	□□□□□ -1.78
SPE1	YKL184W	YBR184W	P38299	523 aa		3.91	□□□□□ -1.78
SPE1	YKL184W	PLB1	P39105	664 aa		3.91	□□□□□ -1.78
SPE1	YKL184W	OSH2	Q12451	1283 aa		3.91	□□□□□ -1.78
SPE1	YKL184W	SPE1	P08432	466 aa		3.9	□□□□□ -1.78
SPE1	YKL184W	TRM2	P33753	639 aa		3.9	□□□□□ -1.78
SPE1	YKL184W	CCM1	P48237	864 aa	Predicted RBP	3.9	□□□□□ -1.78
SPE1	YKL184W	SFB2	P53953	876 aa		3.9	□□□□□ -1.78
SPE1	YKL184W	NAN1	Q02931	896 aa	Known RBP	3.9	□□□□□ -1.78
SPE1	YKL184W	EAF1	Q06337	982 aa		3.9	□□□□□ -1.78
SPE1	YKL184W	CDA1	Q06702	301 aa		3.9	□□□□□ -1.78
SPE1	YKL184W	SIT1	P39980	628 aa		3.89	□□□□□ -1.79
SPE1	YKL184W	CHA4	P43634	648 aa		3.89	□□□□□ -1.79
SPE1	YKL184W	RAI1	P53063	387 aa	Known RBP	3.89	□□□□□ -1.79
SPE1	YKL184W	ERP6	P53198	216 aa		3.89	□□□□□ -1.79
SPE1	YKL184W	SSF2	Q12153	453 aa	Predicted RBP	3.89	□□□□□ -1.79
SPE1	YKL184W	RFA1	P22336	621 aa	Known RBP	3.88	□□□□□ -1.79
SPE1	YKL184W	TSL1	P38427	1098 aa	Known RBP	3.88	□□□□□ -1.79
SPE1	YKL184W	ALR2	P43553	858 aa		3.88	□□□□□ -1.79
SPE1	YKL184W	LCD1	Q04377	747 aa		3.88	□□□□□ -1.79
SPE1	YKL184W	NOT3	P06102	836 aa	Known RBP	3.87	□□□□□ -1.79
SPE1	YKL184W	ARE1	P25628	610 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	STE5	P32917	917 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	UTP8	P53276	713 aa	Known RBP	3.87	□□□□□ -1.79
SPE1	YKL184W	PNS1	Q12412	539 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	PFK1	P16861	987 aa	Known RBP	3.87	□□□□□ -1.79
SPE1	YKL184W	SED4	P25365	1065 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	PMI40	P29952	429 aa	Known RBP	3.87	□□□□□ -1.79
SPE1	YKL184W	DCG1	P32460	244 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	REC104	P33323	182 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	NPP2	P39997	493 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	YJL049W	P47048	450 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	FMP25	Q08023	583 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	AIM39	Q08223	395 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	NTO1	Q12311	748 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	NPC2	Q12408	173 aa		3.87	□□□□□ -1.79
SPE1	YKL184W	HSP60	P19882	572 aa	Known RBP	3.86	□□□□□ -1.79
SPE1	YKL184W	RPL8B	P29453	256 aa	Known RBP	3.86	□□□□□ -1.79
SPE1	YKL184W	URM1	P40554	99 aa	Predicted RBP	3.86	□□□□□ -1.79
SPE1	YKL184W	HUL4	P40985	892 aa		3.86	□□□□□ -1.79
SPE1	YKL184W	PFD1	P46988	109 aa		3.86	□□□□□ -1.79
SPE1	YKL184W	MSE1	P48525	536 aa		3.86	□□□□□ -1.79
SPE1	YKL184W	PHO23	P50947	330 aa		3.86	□□□□□ -1.79
SPE1	YKL184W	YPR071W	Q12346	211 aa		3.86	□□□□□ -1.79
SPE1	YKL184W	PMA1	P05030	918 aa	Known RBP	3.85	□□□□□ -1.79
SPE1	YKL184W	RAD4	P14736	754 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	CAD1	P24813	409 aa	Known RBP	3.85	□□□□□ -1.79
SPE1	YKL184W	NPP1	P25353	742 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	STE13	P33894	931 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	YBR284W	P38150	797 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	CEP3	P40969	608 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	TIM54	P47045	478 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	YGR125W	P53273	1036 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	GUP2	Q08929	609 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	KCS1	Q12494	1050 aa		3.85	□□□□□ -1.79
SPE1	YKL184W	RPS9A	O13516	197 aa	Known RBP	3.84	□□□□□ -1.79
SPE1	YKL184W	HBS1	P32769	611 aa	Known RBP	3.84	□□□□□ -1.79
SPE1	YKL184W	TYE7	P33122	291 aa	Predicted RBP	3.84	□□□□□ -1.79
SPE1	YKL184W	YBR238C	P38330	731 aa	Known RBP	3.84	□□□□□ -1.79
SPE1	YKL184W	NIT3	P49954	291 aa		3.84	□□□□□ -1.79
SPE1	YKL184W	YKE2	P52553	114 aa		3.84	□□□□□ -1.79
SPE1	YKL184W	EXG2	P52911	562 aa		3.84	□□□□□ -1.79
SPE1	YKL184W	NCS6	P53088	359 aa		3.84	□□□□□ -1.79
SPE1	YKL184W	UBX5	Q06682	500 aa		3.84	□□□□□ -1.79
SPE1	YKL184W	YDL124W	Q07551	312 aa	Known RBP	3.84	□□□□□ -1.79
SPE1	YKL184W	WHI4	Q07655	649 aa	Known RBP	3.84	□□□□□ -1.79
SPE1	YKL184W	ENB1	Q08299	606 aa		3.84	□□□□□ -1.79
SPE1	YKL184W	TOK1	P40310	691 aa		3.83	□□□□□ -1.8
SPE1	YKL184W	YIL108W	P40483	696 aa	Known RBP	3.83	□□□□□ -1.8
SPE1	YKL184W	AIM21	P40563	679 aa		3.83	□□□□□ -1.8
SPE1	YKL184W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	3.83	□□□□□ -1.8	not detected
SPE1	YKL184W	PUS9	Q12069	462 aa		3.83	□□□□□ -1.8
SPE1	YKL184W	AFR1	P33304	620 aa		3.82	□□□□□ -1.8
SPE1	YKL184W	DEF1	P35732	738 aa	Known RBP	3.82	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 57.1 ms