RNA–Protein interactions for RNA: YGR002C

SWC4, Transcript of Component of the Swr1p complex that incorporates Htz1p into chromatin, yeast

Gene SWC4, Length 1,431 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWC4	YGR002C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	4.17	□□□□□ -1.74	not detected
SWC4	YGR002C	SRT1	Q03175	343 aa		4.17	□□□□□ -1.74
SWC4	YGR002C	TAF8	Q03750	510 aa		4.17	□□□□□ -1.74
SWC4	YGR002C	YLL058W	Q12198	575 aa		4.17	□□□□□ -1.74
SWC4	YGR002C	SOD2	P00447	233 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	CAN1	P04817	590 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	MSD1	P15179	658 aa	Known RBP	4.16	□□□□□ -1.74
SWC4	YGR002C	TIM23	P32897	222 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	AFR1	P33304	620 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	SIT1	P39980	628 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	SPT20	P50875	604 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	RTA1	P53047	317 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	SFB2	P53953	876 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	FPR4	Q06205	392 aa	Predicted RBP	4.16	□□□□□ -1.74
SWC4	YGR002C	YPR196W	Q06595	470 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	PPM2	Q08282	695 aa		4.16	□□□□□ -1.74
SWC4	YGR002C	TOM70	P07213	617 aa	Known RBP	4.15	□□□□□ -1.74
SWC4	YGR002C	ERR1	P0CX10	437 aa		4.15	□□□□□ -1.74
SWC4	YGR002C	ERR2	P0CX11	437 aa		4.15	□□□□□ -1.74
SWC4	YGR002C	FUN30	P31380	1131 aa		4.15	□□□□□ -1.74
SWC4	YGR002C	BET3	P36149	193 aa		4.15	□□□□□ -1.74
SWC4	YGR002C	GGA2	P38817	585 aa	Known RBP	4.15	□□□□□ -1.74
SWC4	YGR002C	YER158C	P40095	573 aa		4.15	□□□□□ -1.74
SWC4	YGR002C	GTF1	P53260	183 aa	Predicted RBP	4.15	□□□□□ -1.74
SWC4	YGR002C	CIT2	P08679	460 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	TSL1	P38427	1098 aa	Known RBP	4.14	□□□□□ -1.75
SWC4	YGR002C	YAP1801	P38856	637 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	MEF2	P39677	819 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	TOK1	P40310	691 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	BUD6	P41697	788 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	GYP7	P48365	746 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	PBP1	P53297	722 aa	Known RBP	4.14	□□□□□ -1.75
SWC4	YGR002C	GCN5	Q03330	439 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	LCD1	Q04377	747 aa		4.14	□□□□□ -1.75
SWC4	YGR002C	ENA1	P13587	1091 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	SRM1	P21827	482 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	SRP101	P32916	621 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	THI80	P35202	319 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	YKL222C	P35995	705 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	PET10	P36139	283 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	NUP82	P40368	713 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	ENA2	Q01896	1091 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	MSC2	Q03455	724 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	PLB2	Q03674	706 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	BUL2	Q03758	920 aa	Known RBP	4.13	□□□□□ -1.75
SWC4	YGR002C	SIZ1	Q04195	904 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	ENA5	Q12691	1091 aa		4.13	□□□□□ -1.75
SWC4	YGR002C	CDC48	P25694	835 aa	Known RBP	4.12	□□□□□ -1.75
SWC4	YGR002C	YKR078W	P36158	585 aa	Known RBP	4.12	□□□□□ -1.75
SWC4	YGR002C	ECM21	P38167	1117 aa	Known RBP	4.12	□□□□□ -1.75
SWC4	YGR002C	CHZ1	P40019	153 aa	Predicted RBP	4.12	□□□□□ -1.75
SWC4	YGR002C	OSW7	P43611	510 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	RXT3	Q07458	294 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	ESC8	Q08119	714 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	YLR358C	O13565	187 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	PHO8	P11491	566 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	DOM34	P33309	386 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	REC104	P33323	182 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	ZRG8	P40021	1076 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	UBP6	P43593	499 aa	Known RBP	4.12	□□□□□ -1.75
SWC4	YGR002C	CCM1	P48237	864 aa	Predicted RBP	4.12	□□□□□ -1.75
SWC4	YGR002C	GPB1	Q08886	897 aa		4.12	□□□□□ -1.75
SWC4	YGR002C	PPG1	P32838	368 aa		4.11	□□□□□ -1.75
SWC4	YGR002C	GCV2	P49095	1034 aa		4.11	□□□□□ -1.75
SWC4	YGR002C	YDR132C	Q03900	495 aa		4.11	□□□□□ -1.75
SWC4	YGR002C	YLR125W	Q12138	136 aa		4.11	□□□□□ -1.75
SWC4	YGR002C	SCT1	P32784	759 aa		4.1	□□□□□ -1.75
SWC4	YGR002C	FLR1	P38124	548 aa		4.1	□□□□□ -1.75
SWC4	YGR002C	GIP4	P39732	760 aa		4.1	□□□□□ -1.75
SWC4	YGR002C	YGR012W	P53206	393 aa		4.1	□□□□□ -1.75
SWC4	YGR002C	RNH70	P53331	553 aa		4.1	□□□□□ -1.75
SWC4	YGR002C	CDA1	Q06702	301 aa		4.1	□□□□□ -1.75
SWC4	YGR002C	ACK1	Q07622	623 aa	Predicted RBP	4.1	□□□□□ -1.75
SWC4	YGR002C	MND2	P40577	368 aa		4.09	□□□□□ -1.75
SWC4	YGR002C	ALG2	P43636	503 aa		4.09	□□□□□ -1.75
SWC4	YGR002C	HSV2	P50079	448 aa	Predicted RBP	4.09	□□□□□ -1.75
SWC4	YGR002C	YKE2	P52553	114 aa		4.09	□□□□□ -1.75
SWC4	YGR002C	DUS4	Q06063	367 aa		4.09	□□□□□ -1.75
SWC4	YGR002C	ENV7	Q12003	364 aa		4.09	□□□□□ -1.75
SWC4	YGR002C	PHR1	P05066	565 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
SWC4	YGR002C	NOT3	P06102	836 aa	Known RBP	4.08	□□□□□ -1.76
SWC4	YGR002C	HSF1	P10961	833 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
SWC4	YGR002C	RFA1	P22336	621 aa	Known RBP	4.08	□□□□□ -1.76
SWC4	YGR002C	EMC1	P25574	760 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	THI4	P32318	326 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	RPC82	P32349	654 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	POA1	P38218	177 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	YBR238C	P38330	731 aa	Known RBP	4.08	□□□□□ -1.76
SWC4	YGR002C	GYP8	P43570	497 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	TAF1	P46677	1066 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	ALG12	P53730	551 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	YAP6	Q03935	383 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	TPO1	Q07824	586 aa		4.08	□□□□□ -1.76
SWC4	YGR002C	MET6	P05694	767 aa	Known RBP	4.07	□□□□□ -1.76
SWC4	YGR002C	SPE1	P08432	466 aa		4.07	□□□□□ -1.76
SWC4	YGR002C	YCR015C	P25616	317 aa		4.07	□□□□□ -1.76
SWC4	YGR002C	CDC20	P26309	610 aa		4.07	□□□□□ -1.76
SWC4	YGR002C	GDH3	P39708	457 aa		4.07	□□□□□ -1.76
SWC4	YGR002C	NIT3	P49954	291 aa		4.07	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 48.7 ms