RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP60	YAR002W	DID4	P36108	232 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	GRX7	P38068	203 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	SPL2	P38839	148 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	CRG1	P38892	291 aa	RIP-Chip data	3.88	□□□□□ -1.79	not detected
NUP60	YAR002W	SHU2	P38957	223 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	GIP2	P40036	548 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	CCT5	P40413	562 aa	Known RBP	3.88	□□□□□ -1.79
NUP60	YAR002W	YIR042C	P40586	236 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	BUD6	P41697	788 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	LSB6	P42951	607 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	IOC3	P43596	787 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	YPL109C	Q02981	657 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	ADI1	Q03677	179 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	SPR28	Q04921	423 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	INM2	Q05533	292 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	YLR407W	Q06070	228 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	ETT1	Q08421	412 aa	Known RBP	3.88	□□□□□ -1.79
NUP60	YAR002W	NHA1	Q99271	985 aa		3.88	□□□□□ -1.79
NUP60	YAR002W	AI1	P03875	834 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	PRE9	P23638	258 aa	Known RBP	3.87	□□□□□ -1.79
NUP60	YAR002W	RDS1	P25611	832 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	FRD1	P32614	470 aa	Known RBP	3.87	□□□□□ -1.79
NUP60	YAR002W	RER2	P35196	286 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	PGM2	P37012	569 aa	Known RBP	3.87	□□□□□ -1.79
NUP60	YAR002W	MAL33	P38157	468 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	RFC5	P38251	354 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	RRP8	P38961	392 aa	Known RBP	3.87	□□□□□ -1.79
NUP60	YAR002W	NEO1	P40527	1151 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	SPN1	Q06505	410 aa	Predicted RBP	3.87	□□□□□ -1.79
NUP60	YAR002W	IRC3	Q06683	689 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	PPM2	Q08282	695 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	FIG2	P25653	1609 aa		3.87	□□□□□ -1.79
NUP60	YAR002W	CAF20	P12962	161 aa	Known RBP	3.86	□□□□□ -1.79
NUP60	YAR002W	COQ1	P18900	473 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	KRE2	P27809	442 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	UGA4	P32837	571 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	SQT1	P35184	431 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	NPR3	P38742	1146 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	RSM26	P47141	266 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	RPT4	P53549	437 aa	Known RBP	3.86	□□□□□ -1.79
NUP60	YAR002W	NOG1	Q02892	647 aa	Known RBP	3.86	□□□□□ -1.79
NUP60	YAR002W	IRC4	Q03036	179 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	HAS1	Q03532	505 aa	Known RBP	3.86	□□□□□ -1.79
NUP60	YAR002W	SPO71	Q03868	1245 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	EST2	Q06163	884 aa		3.86	□□□□□ -1.79
NUP60	YAR002W	DDP1	Q99321	188 aa	Known RBP	3.86	□□□□□ -1.79
NUP60	YAR002W	TY4B-P	A0A0B7P3V8	1104 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	CHO2	P05374	869 aa	Known RBP	3.85	□□□□□ -1.79
NUP60	YAR002W	HTS1	P07263	546 aa	Known RBP	3.85	□□□□□ -1.79
NUP60	YAR002W	PGI1	P12709	554 aa	Known RBP	3.85	□□□□□ -1.79
NUP60	YAR002W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	3.85	□□□□□ -1.79	not detected
NUP60	YAR002W	SAC7	P17121	654 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	LCB1	P25045	558 aa	Known RBP	3.85	□□□□□ -1.79
NUP60	YAR002W	RPT3	P33298	428 aa	Known RBP	3.85	□□□□□ -1.79
NUP60	YAR002W	PTK1	P36002	662 aa	Predicted RBP	3.85	□□□□□ -1.79
NUP60	YAR002W	YKL077W	P36081	392 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	MIC60	P36112	540 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	MRPL10	P36520	322 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	PFF1	P38244	976 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	EPL1	P43572	832 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	UBX2	Q04228	584 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	TY4A-H	Q6Q5P6	413 aa		3.85	□□□□□ -1.79
NUP60	YAR002W	TAF13	P11747	167 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	CBP3	P21560	335 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	PAN5	P38787	379 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	TED1	P40533	473 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	YFH7	P43591	353 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	YNR014W	P53719	212 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	RPS15	Q01855	142 aa	Known RBP	3.84	□□□□□ -1.79
NUP60	YAR002W	JIP5	Q06214	492 aa	Predicted RBP	3.84	□□□□□ -1.79
NUP60	YAR002W	PSF3	Q12146	194 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	PMD1	P32634	1753 aa		3.84	□□□□□ -1.79
NUP60	YAR002W	HSP82	P02829	709 aa	Known RBP	3.84	□□□□□ -1.8
NUP60	YAR002W	GPA1	P08539	472 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	CLN2	P20438	545 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	SMY1	P32364	656 aa	Known RBP	3.84	□□□□□ -1.8
NUP60	YAR002W	MDL2	P33311	773 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	PET112	P33893	541 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	MNR2	P35724	969 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	MPE1	P35728	441 aa	Known RBP	3.84	□□□□□ -1.8
NUP60	YAR002W	RFT1	P38206	574 aa	Predicted RBP	3.84	□□□□□ -1.8
NUP60	YAR002W	PEX28	P38848	579 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	RPN10	P38886	268 aa	Known RBP	3.84	□□□□□ -1.8
NUP60	YAR002W	AKR1	P39010	764 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	YER130C	P39959	443 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	LSB3	P43603	459 aa	Known RBP	3.84	□□□□□ -1.8
NUP60	YAR002W	YPT11	P48559	417 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	HDA1	P53973	706 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	PEX13	P80667	386 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	SSL2	Q00578	843 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	ERO1	Q03103	563 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	SGD1	Q06132	899 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	TFC6	Q06339	672 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	YIG1	Q08956	461 aa		3.84	□□□□□ -1.8
NUP60	YAR002W	PUS1	Q12211	544 aa	Known RBP	3.84	□□□□□ -1.8
NUP60	YAR002W	FAS2	P19097	1887 aa	Known RBP	3.83	□□□□□ -1.8
NUP60	YAR002W	SNF3	P10870	884 aa		3.83	□□□□□ -1.8
NUP60	YAR002W	HCA4	P20448	770 aa	Known RBP	3.83	□□□□□ -1.8
NUP60	YAR002W	SWI4	P25302	1093 aa	Known RBP	3.83	□□□□□ -1.8
NUP60	YAR002W	MSH3	P25336	1018 aa		3.83	□□□□□ -1.8

Retrieved 100 of 5,963 RNA–protein pairs in 71.7 ms