RNA–Protein interactions for RNA: ENST00000629667.2

PDLIM3-213, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 1,016 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-213ENST00000629667 STYK1Q6J9G0 422 aa21.02■□□□□ 0.96
PDLIM3-213ENST00000629667 BTBD11A6QL63 1104 aa21.01■□□□□ 0.95
PDLIM3-213ENST00000629667 SRGNP10124 158 aa21.01■□□□□ 0.95
PDLIM3-213ENST00000629667 SOGA3Q5TF21 947 aa21.01■□□□□ 0.95
PDLIM3-213ENST00000629667 CHADLQ6NUI6 762 aa21.01■□□□□ 0.95
PDLIM3-213ENST00000629667 PRPF40BQ6NWY9 871 aaKnown RBP21.01■□□□□ 0.95
PDLIM3-213ENST00000629667 DZIP3Q86Y13 1208 aaKnown RBP21.01■□□□□ 0.95
PDLIM3-213ENST00000629667 DDNO94850 711 aaPredicted RBP21■□□□□ 0.95
PDLIM3-213ENST00000629667 MASTLQ96GX5 879 aa21■□□□□ 0.95
PDLIM3-213ENST00000629667 CEMIPQ8WUJ3 1361 aa20.99■□□□□ 0.95
PDLIM3-213ENST00000629667 KCNQ3O43525 872 aa20.99■□□□□ 0.95
PDLIM3-213ENST00000629667 CREBZFQ9NS37 354 aa20.99■□□□□ 0.95
PDLIM3-213ENST00000629667 NPC1L1Q9UHC9 1359 aa20.98■□□□□ 0.95
PDLIM3-213ENST00000629667 NBPF5PQ86XG9 351 aaPredicted RBP20.97■□□□□ 0.95
PDLIM3-213ENST00000629667 MKRN1Q9UHC7 482 aaKnown RBP20.97■□□□□ 0.95
PDLIM3-213ENST00000629667 USP16Q9Y5T5 823 aa20.97■□□□□ 0.95
PDLIM3-213ENST00000629667 SCN4AP35499 1836 aa20.97■□□□□ 0.95
PDLIM3-213ENST00000629667 IQCA1LA6NCM1 817 aa20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 POTEIP0CG38 1075 aa20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 POTEJP0CG39 1038 aa20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 PRKAR2BP31323 418 aa20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 PIP4K2AP48426 406 aaPredicted RBP20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 CLEC4GQ6UXB4 293 aa20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 PHACTR3Q96KR7 559 aa20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 ZNF652Q9Y2D9 606 aa20.96■□□□□ 0.95
PDLIM3-213ENST00000629667 CFAP53Q96M91 514 aa20.95■□□□□ 0.94
PDLIM3-213ENST00000629667 CCDC93Q567U6 631 aa20.94■□□□□ 0.94
PDLIM3-213ENST00000629667 SNRPA1P09661 255 aaKnown RBP20.93■□□□□ 0.94
PDLIM3-213ENST00000629667 NPR1P16066 1061 aa20.93■□□□□ 0.94
PDLIM3-213ENST00000629667 LDHDQ86WU2 507 aa20.93■□□□□ 0.94
PDLIM3-213ENST00000629667 RTF1Q92541 710 aaKnown RBP20.93■□□□□ 0.94
PDLIM3-213ENST00000629667 RSPH6AQ9H0K4 717 aa20.93■□□□□ 0.94
PDLIM3-213ENST00000629667 PRAMEF22A3QJZ6 481 aa20.92■□□□□ 0.94
PDLIM3-213ENST00000629667 TPTE2Q6XPS3 522 aa20.92■□□□□ 0.94
PDLIM3-213ENST00000629667 C7orf43Q8WVR3 580 aa20.92■□□□□ 0.94
PDLIM3-213ENST00000629667 L3MBTL3Q96JM7 780 aaPredicted RBP20.91■□□□□ 0.94
PDLIM3-213ENST00000629667 TAF1DQ9H5J8 278 aaPredicted RBP20.91■□□□□ 0.94
PDLIM3-213ENST00000629667 NIP7Q9Y221 180 aaKnown RBP eCLIP20.91■□□□□ 0.94
PDLIM3-213ENST00000629667 NUDCQ9Y266 331 aa20.91■□□□□ 0.94
PDLIM3-213ENST00000629667 FKBP4Q02790 459 aaKnown RBP eCLIP20.9■□□□□ 0.94
PDLIM3-213ENST00000629667 MCM10Q7L590 875 aa20.9■□□□□ 0.94
PDLIM3-213ENST00000629667 CNTNAP1P78357 1384 aa20.89■□□□□ 0.93
PDLIM3-213ENST00000629667 PASKQ96RG2 1323 aa20.89■□□□□ 0.93
PDLIM3-213ENST00000629667 ZNF277Q9NRM2 450 aaPredicted RBP20.89■□□□□ 0.93
PDLIM3-213ENST00000629667 KLRG2A4D1S0 409 aaPredicted RBP20.88■□□□□ 0.93
PDLIM3-213ENST00000629667 FAM177BA6PVY3 158 aa20.88■□□□□ 0.93
PDLIM3-213ENST00000629667 U2AF1L5P0DN76 240 aaPredicted RBP20.88■□□□□ 0.93
PDLIM3-213ENST00000629667 U2AF1Q01081 240 aaKnown RBP eCLIP20.88■□□□□ 0.93
PDLIM3-213ENST00000629667 EAPPQ56P03 285 aaPredicted RBP20.88■□□□□ 0.93
PDLIM3-213ENST00000629667 RTKN2Q8IZC4 609 aa20.88■□□□□ 0.93
PDLIM3-213ENST00000629667 RGL2O15211 777 aa20.87■□□□□ 0.93
PDLIM3-213ENST00000629667 GTF2E1P29083 439 aaPredicted RBP20.87■□□□□ 0.93
PDLIM3-213ENST00000629667 HACL1Q9UJ83 578 aa20.87■□□□□ 0.93
PDLIM3-213ENST00000629667 CLEC11AQ9Y240 323 aa20.87■□□□□ 0.93
PDLIM3-213ENST00000629667 ZNF541Q9H0D2 1346 aa20.86■□□□□ 0.93
PDLIM3-213ENST00000629667 TMEM88BA6NKF7 163 aa20.86■□□□□ 0.93
PDLIM3-213ENST00000629667 NBPF26B4DH59 902 aa20.86■□□□□ 0.93
PDLIM3-213ENST00000629667 ALDH1B1P30837 517 aa20.86■□□□□ 0.93
PDLIM3-213ENST00000629667 NBPF10Q6P3W6 841 aaKnown RBP20.86■□□□□ 0.93
PDLIM3-213ENST00000629667 OLFM4Q6UX06 510 aa20.86■□□□□ 0.93
PDLIM3-213ENST00000629667 NBPF15Q8N660 670 aa20.86■□□□□ 0.93
PDLIM3-213ENST00000629667 FOXN1O15353 648 aa20.85■□□□□ 0.93
PDLIM3-213ENST00000629667 DCTN1Q14203 1278 aa20.85■□□□□ 0.93
PDLIM3-213ENST00000629667 ITGBL1O95965 494 aaPredicted RBP20.84■□□□□ 0.93
PDLIM3-213ENST00000629667 EPHX2P34913 555 aa20.84■□□□□ 0.93
PDLIM3-213ENST00000629667 IARSP41252 1262 aaKnown RBP20.84■□□□□ 0.93
PDLIM3-213ENST00000629667 AIDAQ96BJ3 306 aa20.84■□□□□ 0.93
PDLIM3-213ENST00000629667 LAMB4A4D0S4 1761 aa20.84■□□□□ 0.93
PDLIM3-213ENST00000629667 HTATSF1O43719 755 aaKnown RBP20.83■□□□□ 0.93
PDLIM3-213ENST00000629667 HLFQ16534 295 aa20.83■□□□□ 0.93
PDLIM3-213ENST00000629667 PNMA8AQ86V59 439 aaPredicted RBP20.83■□□□□ 0.93
PDLIM3-213ENST00000629667 SYNE4Q8N205 404 aa20.83■□□□□ 0.93
PDLIM3-213ENST00000629667 ADAMTSL1Q8N6G6 1762 aa20.82■□□□□ 0.92
PDLIM3-213ENST00000629667 RNF123Q5XPI4 1314 aa20.82■□□□□ 0.92
PDLIM3-213ENST00000629667 VEGFBP49765 207 aa20.82■□□□□ 0.92
PDLIM3-213ENST00000629667 TAF7Q15545 349 aaPredicted RBP20.82■□□□□ 0.92
PDLIM3-213ENST00000629667 PRDM10Q9NQV6 1147 aa20.82■□□□□ 0.92
PDLIM3-213ENST00000629667 NUP98P52948 1817 aa20.82■□□□□ 0.92
PDLIM3-213ENST00000629667 FZD9O00144 591 aa20.81■□□□□ 0.92
PDLIM3-213ENST00000629667 CTCFP49711 727 aaPredicted RBP20.81■□□□□ 0.92
PDLIM3-213ENST00000629667 JDP2Q8WYK2 163 aa20.81■□□□□ 0.92
PDLIM3-213ENST00000629667 NYXQ9GZU5 481 aa20.81■□□□□ 0.92
PDLIM3-213ENST00000629667 PPP2R1AP30153 589 aa20.8■□□□□ 0.92
PDLIM3-213ENST00000629667 CNTROBQ8N137 903 aa20.8■□□□□ 0.92
PDLIM3-213ENST00000629667 GPC2Q8N158 579 aa20.8■□□□□ 0.92
PDLIM3-213ENST00000629667 NGEFQ8N5V2 710 aa20.8■□□□□ 0.92
PDLIM3-213ENST00000629667 MIS18AQ9NYP9 233 aa20.8■□□□□ 0.92
PDLIM3-213ENST00000629667 MAP1SQ66K74 1059 aaPredicted RBP20.79■□□□□ 0.92
PDLIM3-213ENST00000629667 PSMD1Q99460 953 aa20.79■□□□□ 0.92
PDLIM3-213ENST00000629667 DLG5Q8TDM6 1919 aa20.78■□□□□ 0.92
PDLIM3-213ENST00000629667 NUTM1Q86Y26 1132 aa20.78■□□□□ 0.92
PDLIM3-213ENST00000629667 ERVV-1B6SEH8 477 aa20.77■□□□□ 0.92
PDLIM3-213ENST00000629667 NEFMP07197 916 aa20.77■□□□□ 0.92
PDLIM3-213ENST00000629667 EIF6P56537 245 aaKnown RBP20.77■□□□□ 0.92
PDLIM3-213ENST00000629667 DEFB115Q30KQ5 88 aa20.77■□□□□ 0.92
PDLIM3-213ENST00000629667 CRY2Q49AN0 593 aa20.77■□□□□ 0.92
PDLIM3-213ENST00000629667 CC2D2BQ6DHV5 1058 aa20.77■□□□□ 0.92
PDLIM3-213ENST00000629667 RPGRQ92834 1020 aaKnown RBP20.77■□□□□ 0.92
PDLIM3-213ENST00000629667 ABCC12Q96J65 1359 aa20.76■□□□□ 0.91
PDLIM3-213ENST00000629667 RASSF10A6NK89 507 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms