RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 REC8O95072 547 aa26.08■■□□□ 1.77
LIME1-210ENST00000621325 NEXNQ0ZGT2 675 aa26.07■■□□□ 1.76
LIME1-210ENST00000621325 PI4K2BQ8TCG2 481 aa26.07■■□□□ 1.76
LIME1-210ENST00000621325 MAP4K4O95819 1239 aaPredicted RBP26.07■■□□□ 1.76
LIME1-210ENST00000621325 GCKRQ14397 625 aa26.07■■□□□ 1.76
LIME1-210ENST00000621325 NKX1-1Q15270 411 aaPredicted RBP26.07■■□□□ 1.76
LIME1-210ENST00000621325 HSP90AB4PQ58FF6 505 aa26.07■■□□□ 1.76
LIME1-210ENST00000621325 AOX1Q06278 1338 aa26.07■■□□□ 1.76
LIME1-210ENST00000621325 ERVV-2B6SEH9 535 aa26.06■■□□□ 1.76
LIME1-210ENST00000621325 CHMLP26374 656 aa26.06■■□□□ 1.76
LIME1-210ENST00000621325 JARID2Q92833 1246 aaPredicted RBP26.06■■□□□ 1.76
LIME1-210ENST00000621325 ESYT1Q9BSJ8 1104 aa26.06■■□□□ 1.76
LIME1-210ENST00000621325 NBPF26B4DH59 902 aa26.05■■□□□ 1.76
LIME1-210ENST00000621325 NBPF14Q5TI25 921 aa26.05■■□□□ 1.76
LIME1-210ENST00000621325 NBPF10Q6P3W6 841 aaKnown RBP26.05■■□□□ 1.76
LIME1-210ENST00000621325 NBPF15Q8N660 670 aa26.05■■□□□ 1.76
LIME1-210ENST00000621325 ZMYND15Q9H091 742 aa26.05■■□□□ 1.76
LIME1-210ENST00000621325 CHMP5Q9NZZ3 219 aa26.05■■□□□ 1.76
LIME1-210ENST00000621325 HDAC5Q9UQL6 1122 aa26.05■■□□□ 1.76
LIME1-210ENST00000621325 K7ELQ4 463 aaPredicted RBP26.04■■□□□ 1.76
LIME1-210ENST00000621325 BTG4Q9NY30 223 aa26.04■■□□□ 1.76
LIME1-210ENST00000621325 SHANK3Q9BYB0 1731 aa26.04■■□□□ 1.76
LIME1-210ENST00000621325 PTCD1O75127 700 aaKnown RBP26.04■■□□□ 1.76
LIME1-210ENST00000621325 DDIT3P35638 169 aa26.04■■□□□ 1.76
LIME1-210ENST00000621325 RABEP1Q15276 862 aa26.04■■□□□ 1.76
LIME1-210ENST00000621325 EPHA10Q5JZY3 1008 aa26.04■■□□□ 1.76
LIME1-210ENST00000621325 FOXD4L1Q9NU39 408 aa26.03■■□□□ 1.76
LIME1-210ENST00000621325 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.03■■□□□ 1.76
LIME1-210ENST00000621325 ATP5J2-PTCD1G3V325 749 aa26.02■■□□□ 1.76
LIME1-210ENST00000621325 IL25Q9H293 177 aa26.01■■□□□ 1.75
LIME1-210ENST00000621325 KLHDC4Q8TBB5 520 aa26■■□□□ 1.75
LIME1-210ENST00000621325 A1BGP04217 495 aa26■■□□□ 1.75
LIME1-210ENST00000621325 KCPQ6ZWJ8 1503 aa26■■□□□ 1.75
LIME1-210ENST00000621325 CLASRPQ8N2M8 674 aaKnown RBP25.99■■□□□ 1.75
LIME1-210ENST00000621325 LAMB4A4D0S4 1761 aa25.99■■□□□ 1.75
LIME1-210ENST00000621325 SASH1O94885 1247 aa25.98■■□□□ 1.75
LIME1-210ENST00000621325 SIL1Q9H173 461 aa25.98■■□□□ 1.75
LIME1-210ENST00000621325 TTLL7Q6ZT98 887 aa25.98■■□□□ 1.75
LIME1-210ENST00000621325 PLBD2Q8NHP8 589 aa25.98■■□□□ 1.75
LIME1-210ENST00000621325 ANO2Q9NQ90 1003 aa25.97■■□□□ 1.75
LIME1-210ENST00000621325 UBR2Q8IWV8 1755 aa25.97■■□□□ 1.75
LIME1-210ENST00000621325 USP42Q9H9J4 1324 aaKnown RBP25.97■■□□□ 1.75
LIME1-210ENST00000621325 HSP90AA1P07900 732 aaKnown RBP25.97■■□□□ 1.75
LIME1-210ENST00000621325 UBE3BQ7Z3V4 1068 aa25.97■■□□□ 1.75
LIME1-210ENST00000621325 ERC1Q8IUD2 1116 aa25.97■■□□□ 1.75
LIME1-210ENST00000621325 VSIG10Q8N0Z9 540 aa25.97■■□□□ 1.75
LIME1-210ENST00000621325 ARFGEF2Q9Y6D5 1785 aa25.96■■□□□ 1.75
LIME1-210ENST00000621325 G3BP1Q13283 466 aaKnown RBP eCLIP25.95■■□□□ 1.75
LIME1-210ENST00000621325 AACSQ86V21 672 aa25.95■■□□□ 1.75
LIME1-210ENST00000621325 PALD1Q9ULE6 856 aa25.95■■□□□ 1.74
LIME1-210ENST00000621325 ERBB4Q15303 1308 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 TTC41PQ6P2S7 1318 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 TOGARAM1Q9Y4F4 1720 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 IFIT2P09913 472 aaKnown RBP25.94■■□□□ 1.74
LIME1-210ENST00000621325 PAPPAQ13219 1627 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 TNS2Q63HR2 1409 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 A0A087WZG4 1122 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 GSE1Q14687 1217 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 EAF2Q96CJ1 260 aaPredicted RBP25.94■■□□□ 1.74
LIME1-210ENST00000621325 TMOD3Q9NYL9 352 aa25.94■■□□□ 1.74
LIME1-210ENST00000621325 ROBO1Q9Y6N7 1651 aa25.93■■□□□ 1.74
LIME1-210ENST00000621325 ECHDC1Q9NTX5 307 aa25.93■■□□□ 1.74
LIME1-210ENST00000621325 GLRX3O76003 335 aaKnown RBP25.93■■□□□ 1.74
LIME1-210ENST00000621325 CNTROBQ8N137 903 aa25.93■■□□□ 1.74
LIME1-210ENST00000621325 AFDNP55196 1824 aaKnown RBP25.92■■□□□ 1.74
LIME1-210ENST00000621325 ASAP1Q9ULH1 1129 aa25.92■■□□□ 1.74
LIME1-210ENST00000621325 MCM4P33991 863 aa25.91■■□□□ 1.74
LIME1-210ENST00000621325 CASP7P55210 303 aa25.91■■□□□ 1.74
LIME1-210ENST00000621325 CCDC8Q9H0W5 538 aaPredicted RBP25.91■■□□□ 1.74
LIME1-210ENST00000621325 TLR7Q9NYK1 1049 aaKnown RBP25.91■■□□□ 1.74
LIME1-210ENST00000621325 PIGBQ92521 554 aa25.9■■□□□ 1.74
LIME1-210ENST00000621325 ZBTB3Q9H5J0 574 aa25.9■■□□□ 1.74
LIME1-210ENST00000621325 AK9Q5TCS8 1911 aa25.9■■□□□ 1.74
LIME1-210ENST00000621325 RFX5P48382 616 aaPredicted RBP25.89■■□□□ 1.74
LIME1-210ENST00000621325 GLIPR1L2Q4G1C9 344 aa25.89■■□□□ 1.74
LIME1-210ENST00000621325 ST18O60284 1047 aa25.88■■□□□ 1.73
LIME1-210ENST00000621325 RABL6Q3YEC7 729 aaPredicted RBP25.88■■□□□ 1.73
LIME1-210ENST00000621325 CIZ1Q9ULV3 898 aaPredicted RBP25.88■■□□□ 1.73
LIME1-210ENST00000621325 SGSM2O43147 1006 aa25.88■■□□□ 1.73
LIME1-210ENST00000621325 PTPN12Q05209 780 aaKnown RBP25.87■■□□□ 1.73
LIME1-210ENST00000621325 CWC27Q6UX04 472 aaKnown RBP25.87■■□□□ 1.73
LIME1-210ENST00000621325 TNPO1Q92973 898 aaKnown RBP25.87■■□□□ 1.73
LIME1-210ENST00000621325 GPATCH3Q96I76 525 aa25.87■■□□□ 1.73
LIME1-210ENST00000621325 COPRSQ9NQ92 184 aa25.87■■□□□ 1.73
LIME1-210ENST00000621325 DISP2A7MBM2 1401 aa25.86■■□□□ 1.73
LIME1-210ENST00000621325 NEK4P51957 841 aa25.86■■□□□ 1.73
LIME1-210ENST00000621325 MCCP23508 829 aa25.86■■□□□ 1.73
LIME1-210ENST00000621325 COL14A1Q05707 1796 aaKnown RBP25.86■■□□□ 1.73
LIME1-210ENST00000621325 RAB3GAP1Q15042 981 aa25.85■■□□□ 1.73
LIME1-210ENST00000621325 DNAJC10Q8IXB1 793 aa25.85■■□□□ 1.73
LIME1-210ENST00000621325 ATG3Q9NT62 314 aa25.85■■□□□ 1.73
LIME1-210ENST00000621325 ZNF330Q9Y3S2 320 aaPredicted RBP25.85■■□□□ 1.73
LIME1-210ENST00000621325 COL16A1Q07092 1604 aaPredicted RBP25.85■■□□□ 1.73
LIME1-210ENST00000621325 H7C1W4 665 aa25.85■■□□□ 1.73
LIME1-210ENST00000621325 COL15A1P39059 1388 aa25.84■■□□□ 1.73
LIME1-210ENST00000621325 LMBR1LQ6UX01 489 aa25.84■■□□□ 1.73
LIME1-210ENST00000621325 CWC25Q9NXE8 425 aaPredicted RBP25.84■■□□□ 1.73
LIME1-210ENST00000621325 AHDC1Q5TGY3 1603 aaPredicted RBP25.84■■□□□ 1.73
LIME1-210ENST00000621325 NUP188Q5SRE5 1749 aa25.84■■□□□ 1.73
LIME1-210ENST00000621325 FOXO4P98177 505 aa25.83■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms