RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 PARP3Q9Y6F1 533 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 CEP350Q5VT06 3117 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 C4AP0C0L4 1744 aa6.79□□□□□ -1.32
SHMT1-211ENST00000618902 LAMB4A4D0S4 1761 aa6.78□□□□□ -1.32
SHMT1-211ENST00000618902 TCERG1O14776 1098 aaKnown RBP6.78□□□□□ -1.32
SHMT1-211ENST00000618902 CAMTA2O94983 1202 aa6.78□□□□□ -1.32
SHMT1-211ENST00000618902 EIF2S2P20042 333 aaKnown RBP6.78□□□□□ -1.32
SHMT1-211ENST00000618902 HNRNPUQ00839 825 aaKnown RBP eCLIP6.78□□□□□ -1.32
SHMT1-211ENST00000618902 MAPK8IP2Q13387 824 aaPredicted RBP6.78□□□□□ -1.32
SHMT1-211ENST00000618902 FKBP8Q14318 412 aa6.78□□□□□ -1.32
SHMT1-211ENST00000618902 COL15A1P39059 1388 aa6.78□□□□□ -1.32
SHMT1-211ENST00000618902 ERVV-1B6SEH8 477 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 VAMP4O75379 141 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 MMP10P09238 476 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 TM4SF1P30408 202 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 GOLGA2Q08379 1002 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 HDGFL1Q5TGJ6 251 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 RNF216Q9NWF9 866 aaPredicted RBP6.77□□□□□ -1.33
SHMT1-211ENST00000618902 CHPF2Q9P2E5 772 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 TBC1D2BQ9UPU7 963 aa6.77□□□□□ -1.33
SHMT1-211ENST00000618902 E9PSI1 815 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 MYL6BP14649 208 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 DDR1Q08345 913 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 HLFQ16534 295 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 GPR162Q16538 588 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 TWISTNBQ3B726 338 aaPredicted RBP6.76□□□□□ -1.33
SHMT1-211ENST00000618902 USPL1Q5W0Q7 1092 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 G2E3Q7L622 706 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 XAGE3Q8WTP9 111 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 DDX21Q9NR30 783 aaKnown RBP eCLIP6.76□□□□□ -1.33
SHMT1-211ENST00000618902 ZNF330Q9Y3S2 320 aaPredicted RBP6.76□□□□□ -1.33
SHMT1-211ENST00000618902 CHD4Q14839 1912 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 RNF123Q5XPI4 1314 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 ZBED9Q6R2W3 1325 aa6.76□□□□□ -1.33
SHMT1-211ENST00000618902 ZC3H4Q9UPT8 1303 aaKnown RBP6.76□□□□□ -1.33
SHMT1-211ENST00000618902 CARMIL3Q8ND23 1372 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 PDE6BP35913 854 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 NFIXQ14938 502 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 GRIPAP1Q4V328 841 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 SOGA3Q5TF21 947 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 TBC1D9BQ66K14 1250 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 SETDB2Q96T68 719 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 BRIP1Q9BX63 1249 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 MYH16Q9H6N6 1097 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 PHAXQ9H814 394 aaKnown RBP6.75□□□□□ -1.33
SHMT1-211ENST00000618902 KIF13BQ9NQT8 1826 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 C10orf71Q711Q0 1435 aa6.75□□□□□ -1.33
SHMT1-211ENST00000618902 POLRMTO00411 1230 aaKnown RBP6.74□□□□□ -1.33
SHMT1-211ENST00000618902 HSP90B1P14625 803 aaKnown RBP6.74□□□□□ -1.33
SHMT1-211ENST00000618902 HSP90AB3PQ58FF7 597 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 TPTE2Q6XPS3 522 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 COPS6Q7L5N1 327 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 DZIP3Q86Y13 1208 aaKnown RBP6.74□□□□□ -1.33
SHMT1-211ENST00000618902 NYXQ9GZU5 481 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 ZBTB3Q9H5J0 574 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 PIM2Q9P1W9 311 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 SCN7AQ01118 1682 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 MAP3K15Q6ZN16 1313 aa6.74□□□□□ -1.33
SHMT1-211ENST00000618902 IBTKQ9P2D0 1353 aaPredicted RBP6.73□□□□□ -1.33
SHMT1-211ENST00000618902 BCORQ6W2J9 1755 aa6.73□□□□□ -1.33
SHMT1-211ENST00000618902 YY1P25490 414 aa6.73□□□□□ -1.33
SHMT1-211ENST00000618902 AIMP1Q12904 312 aaKnown RBP6.73□□□□□ -1.33
SHMT1-211ENST00000618902 PARP10Q53GL7 1025 aa6.73□□□□□ -1.33
SHMT1-211ENST00000618902 CCDC24Q8N4L8 307 aa6.73□□□□□ -1.33
SHMT1-211ENST00000618902 MRPL50Q8N5N7 158 aaKnown RBP6.73□□□□□ -1.33
SHMT1-211ENST00000618902 SSH1Q8WYL5 1049 aa6.73□□□□□ -1.33
SHMT1-211ENST00000618902 ZNF428Q96B54 188 aa6.73□□□□□ -1.33
SHMT1-211ENST00000618902 RTN4Q9NQC3 1192 aaKnown RBP6.73□□□□□ -1.33
SHMT1-211ENST00000618902 DBF4Q9UBU7 674 aaPredicted RBP6.73□□□□□ -1.33
SHMT1-211ENST00000618902 UBN2Q6ZU65 1347 aa6.73□□□□□ -1.33
SHMT1-211ENST00000618902 ADCY9O60503 1353 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 PCNTO95613 3336 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 NUP98P52948 1817 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 KLRG2A4D1S0 409 aaPredicted RBP6.72□□□□□ -1.33
SHMT1-211ENST00000618902 H0YIN7 160 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 SLC4A2P04920 1241 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 SERPINB2P05120 415 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 ST5P78524 1137 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 DALRD3Q5D0E6 543 aaKnown RBP6.72□□□□□ -1.33
SHMT1-211ENST00000618902 CCDC30Q5VVM6 783 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 KIF6Q6ZMV9 814 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 BICDL1Q6ZP65 573 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 ZNF34Q8IZ26 560 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 SYNE4Q8N205 404 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 BCL2L13Q9BXK5 485 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 HYPKQ9NX55 129 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 RIC1Q4ADV7 1423 aa6.72□□□□□ -1.33
SHMT1-211ENST00000618902 AFDNP55196 1824 aaKnown RBP6.71□□□□□ -1.33
SHMT1-211ENST00000618902 ATP10DQ9P241 1426 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 ATP5J2-PTCD1G3V325 749 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 GPTP24298 496 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 RARSP54136 660 aaKnown RBP6.71□□□□□ -1.34
SHMT1-211ENST00000618902 FLIIQ13045 1269 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 CC2D2BQ6DHV5 1058 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 GIGYF2Q6Y7W6 1299 aaKnown RBP6.71□□□□□ -1.34
SHMT1-211ENST00000618902 ANKRD13DQ6ZTN6 518 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 PPP1R42Q7Z4L9 355 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 CNBD1Q8NA66 436 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 NLGN2Q8NFZ4 835 aa6.71□□□□□ -1.34
SHMT1-211ENST00000618902 CNKSR1Q969H4 720 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms