RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 SLC51AQ86UW1 340 aa13.88□□□□□ -0.19
LIG1-213ENST00000596672 BRIP1Q9BX63 1249 aa13.88□□□□□ -0.19
LIG1-213ENST00000596672 FER1L6Q2WGJ9 1857 aa13.88□□□□□ -0.19
LIG1-213ENST00000596672 SENP3-EIF4A1A0A087X0R7 540 aa13.87□□□□□ -0.19
LIG1-213ENST00000596672 PROSER3Q2NL68 480 aa13.87□□□□□ -0.19
LIG1-213ENST00000596672 TNRC6CQ9HCJ0 1690 aaKnown RBP13.87□□□□□ -0.19
LIG1-213ENST00000596672 ANXA1P04083 346 aa13.86□□□□□ -0.19
LIG1-213ENST00000596672 NGEFQ8N5V2 710 aa13.86□□□□□ -0.19
LIG1-213ENST00000596672 TTLL6Q8N841 843 aa13.86□□□□□ -0.19
LIG1-213ENST00000596672 SETDB2Q96T68 719 aa13.86□□□□□ -0.19
LIG1-213ENST00000596672 RNF181Q9P0P0 153 aa13.86□□□□□ -0.19
LIG1-213ENST00000596672 H0YIN7 160 aa13.85□□□□□ -0.19
LIG1-213ENST00000596672 SRGNP10124 158 aa13.85□□□□□ -0.19
LIG1-213ENST00000596672 OLFM4Q6UX06 510 aa13.85□□□□□ -0.19
LIG1-213ENST00000596672 CLEC4GQ6UXB4 293 aa13.85□□□□□ -0.19
LIG1-213ENST00000596672 PNISRQ8TF01 805 aaKnown RBP13.85□□□□□ -0.19
LIG1-213ENST00000596672 C7orf43Q8WVR3 580 aa13.85□□□□□ -0.19
LIG1-213ENST00000596672 ZNF219Q9P2Y4 722 aaPredicted RBP13.85□□□□□ -0.19
LIG1-213ENST00000596672 MAPK8IP3Q9UPT6 1336 aa13.85□□□□□ -0.19
LIG1-213ENST00000596672 ABCC12Q96J65 1359 aa13.84□□□□□ -0.19
LIG1-213ENST00000596672 ARFGEF2Q9Y6D5 1785 aa13.84□□□□□ -0.19
LIG1-213ENST00000596672 KLRG2A4D1S0 409 aaPredicted RBP13.84□□□□□ -0.19
LIG1-213ENST00000596672 FAM177BA6PVY3 158 aa13.84□□□□□ -0.19
LIG1-213ENST00000596672 NEUROD2Q15784 382 aa13.84□□□□□ -0.19
LIG1-213ENST00000596672 CNBD1Q8NA66 436 aa13.84□□□□□ -0.19
LIG1-213ENST00000596672 ZNF622Q969S3 477 aaKnown RBP eCLIP13.84□□□□□ -0.194e-8■■□□□ 14.1
LIG1-213ENST00000596672 UBN2Q6ZU65 1347 aa13.84□□□□□ -0.19
LIG1-213ENST00000596672 CHL1O00533 1208 aa13.83□□□□□ -0.2
LIG1-213ENST00000596672 C21orf2O43822 256 aa13.83□□□□□ -0.2
LIG1-213ENST00000596672 MYL6BP14649 208 aa13.83□□□□□ -0.2
LIG1-213ENST00000596672 C3orf67Q6ZVT6 689 aa13.83□□□□□ -0.2
LIG1-213ENST00000596672 TSPYL4Q9UJ04 414 aa13.83□□□□□ -0.2
LIG1-213ENST00000596672 NIP7Q9Y221 180 aaKnown RBP eCLIP13.83□□□□□ -0.2
LIG1-213ENST00000596672 DICER1Q9UPY3 1922 aaKnown RBP13.83□□□□□ -0.2
LIG1-213ENST00000596672 NBPF5PQ86XG9 351 aaPredicted RBP13.82□□□□□ -0.2
LIG1-213ENST00000596672 ZBTB3Q9H5J0 574 aa13.82□□□□□ -0.2
LIG1-213ENST00000596672 MAP3K15Q6ZN16 1313 aa13.82□□□□□ -0.2
LIG1-213ENST00000596672 TIAM2Q8IVF5 1701 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 POTECB2RU33 542 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 RGL2O15211 777 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 PDE6BP35913 854 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 SUSD4Q5VX71 490 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 PRPF40BQ6NWY9 871 aaKnown RBP13.81□□□□□ -0.2
LIG1-213ENST00000596672 NUTM1Q86Y26 1132 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 NECTIN2Q92692 538 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 RUNDC1Q96C34 613 aa13.81□□□□□ -0.2
LIG1-213ENST00000596672 ERVV-1B6SEH8 477 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 NEFMP07197 916 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 EIF2S2P20042 333 aaKnown RBP13.8□□□□□ -0.2
LIG1-213ENST00000596672 GPTP24298 496 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 ERFEQ4G0M1 354 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 STYK1Q6J9G0 422 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 ZNF34Q8IZ26 560 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 PNNQ9H307 717 aaKnown RBP13.8□□□□□ -0.2
LIG1-213ENST00000596672 RRAGCQ9HB90 399 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 SNED1Q8TER0 1413 aa13.8□□□□□ -0.2
LIG1-213ENST00000596672 LMNB1P20700 586 aa13.79□□□□□ -0.2
LIG1-213ENST00000596672 SYNE4Q8N205 404 aa13.79□□□□□ -0.2
LIG1-213ENST00000596672 MASTLQ96GX5 879 aa13.79□□□□□ -0.2
LIG1-213ENST00000596672 APAF1O14727 1248 aa13.78□□□□□ -0.2
LIG1-213ENST00000596672 NTSR2O95665 410 aa13.78□□□□□ -0.2
LIG1-213ENST00000596672 ZNF853P0CG23 659 aa13.78□□□□□ -0.2
LIG1-213ENST00000596672 HSPA6P17066 643 aa13.78□□□□□ -0.2
LIG1-213ENST00000596672 ST5P78524 1137 aa13.78□□□□□ -0.2
LIG1-213ENST00000596672 BABAM1Q9NWV8 329 aa13.78□□□□□ -0.2
LIG1-213ENST00000596672 PCNTO95613 3336 aa13.77□□□□□ -0.2
LIG1-213ENST00000596672 TAF1P21675 1872 aa13.77□□□□□ -0.21
LIG1-213ENST00000596672 COL4A5P29400 1685 aa13.77□□□□□ -0.21
LIG1-213ENST00000596672 CRY2Q49AN0 593 aa13.77□□□□□ -0.21
LIG1-213ENST00000596672 TPTE2Q6XPS3 522 aa13.77□□□□□ -0.21
LIG1-213ENST00000596672 GIGYF2Q6Y7W6 1299 aaKnown RBP13.77□□□□□ -0.21
LIG1-213ENST00000596672 NPM2Q86SE8 214 aaKnown RBP13.77□□□□□ -0.21
LIG1-213ENST00000596672 ZNF428Q96B54 188 aa13.77□□□□□ -0.21
LIG1-213ENST00000596672 ZNF652Q9Y2D9 606 aa13.77□□□□□ -0.21
LIG1-213ENST00000596672 ERBB4Q15303 1308 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 TOMM70O94826 608 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 NPR1P16066 1061 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 HTRA3P83110 453 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 WDR43Q15061 677 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIG1-213ENST00000596672 XAGE3Q8WTP9 111 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 CNKSR1Q969H4 720 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 PDZRN3Q9UPQ7 1066 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 LAS1LQ9Y4W2 734 aaKnown RBP13.76□□□□□ -0.21
LIG1-213ENST00000596672 LAMB2P55268 1798 aa13.76□□□□□ -0.21
LIG1-213ENST00000596672 COL4A1P02462 1669 aa13.75□□□□□ -0.21
LIG1-213ENST00000596672 LTBP3Q9NS15 1303 aa13.75□□□□□ -0.21
LIG1-213ENST00000596672 GLTPD2A6NH11 291 aa13.75□□□□□ -0.21
LIG1-213ENST00000596672 COPS6Q7L5N1 327 aa13.75□□□□□ -0.21
LIG1-213ENST00000596672 MBIPQ9NS73 344 aa13.75□□□□□ -0.21
LIG1-213ENST00000596672 CHPF2Q9P2E5 772 aa13.75□□□□□ -0.21
LIG1-213ENST00000596672 ANKRD36CQ5JPF3 1778 aa13.75□□□□□ -0.21
LIG1-213ENST00000596672 LMOD3Q0VAK6 560 aa13.74□□□□□ -0.21
LIG1-213ENST00000596672 DNAJC5GQ8N7S2 189 aa13.74□□□□□ -0.21
LIG1-213ENST00000596672 WDR90Q96KV7 1748 aa13.73□□□□□ -0.21
LIG1-213ENST00000596672 NPHP1O15259 732 aa13.73□□□□□ -0.21
LIG1-213ENST00000596672 AIMP1Q12904 312 aaKnown RBP13.73□□□□□ -0.21
LIG1-213ENST00000596672 KIF6Q6ZMV9 814 aa13.73□□□□□ -0.21
LIG1-213ENST00000596672 RBM46Q8TBY0 533 aaKnown RBP13.73□□□□□ -0.21
LIG1-213ENST00000596672 CFAP44Q96MT7 982 aa13.73□□□□□ -0.21
LIG1-213ENST00000596672 TAOK3Q9H2K8 898 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms