RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CNBD1Q8NA66 436 aa17.18■□□□□ 0.34
LIG1-212ENST00000596549 SETDB2Q96T68 719 aa17.18■□□□□ 0.34
LIG1-212ENST00000596549 TRIM35Q9UPQ4 493 aa17.18■□□□□ 0.34
LIG1-212ENST00000596549 ZEB1P37275 1124 aaPredicted RBP17.17■□□□□ 0.34
LIG1-212ENST00000596549 HLFQ16534 295 aa17.17■□□□□ 0.34
LIG1-212ENST00000596549 CLEC4GQ6UXB4 293 aa17.17■□□□□ 0.34
LIG1-212ENST00000596549 GPBP1L1Q9HC44 474 aaPredicted RBP17.17■□□□□ 0.34
LIG1-212ENST00000596549 RGL2O15211 777 aa17.16■□□□□ 0.34
LIG1-212ENST00000596549 RASSF7Q02833 373 aa17.16■□□□□ 0.34
LIG1-212ENST00000596549 NEUROD2Q15784 382 aa17.16■□□□□ 0.34
LIG1-212ENST00000596549 LRP10Q7Z4F1 713 aa17.16■□□□□ 0.34
LIG1-212ENST00000596549 BRIP1Q9BX63 1249 aa17.16■□□□□ 0.34
LIG1-212ENST00000596549 ZNF652Q9Y2D9 606 aa17.16■□□□□ 0.34
LIG1-212ENST00000596549 PRELPP51888 382 aa17.15■□□□□ 0.34
LIG1-212ENST00000596549 TTLL7Q6ZT98 887 aa17.15■□□□□ 0.34
LIG1-212ENST00000596549 ERBB4Q15303 1308 aa17.15■□□□□ 0.34
LIG1-212ENST00000596549 ABCC12Q96J65 1359 aa17.15■□□□□ 0.34
LIG1-212ENST00000596549 H0YIN7 160 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 MYL6BP14649 208 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 PDE6BP35913 854 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 ST5P78524 1137 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 KRT24Q2M2I5 525 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 CCDC184Q52MB2 194 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 C9orf131Q5VYM1 1079 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 TTLL6Q8N841 843 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 BABAM1Q9NWV8 329 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 NIP7Q9Y221 180 aaKnown RBP eCLIP17.14■□□□□ 0.33
LIG1-212ENST00000596549 MAP3K15Q6ZN16 1313 aa17.14■□□□□ 0.33
LIG1-212ENST00000596549 PDIA6Q15084 440 aa17.13■□□□□ 0.33
LIG1-212ENST00000596549 NGEFQ8N5V2 710 aa17.13■□□□□ 0.33
LIG1-212ENST00000596549 DDX60Q8IY21 1712 aaKnown RBP17.13■□□□□ 0.33
LIG1-212ENST00000596549 NFKBIEO00221 500 aa17.12■□□□□ 0.33
LIG1-212ENST00000596549 KIF3CO14782 793 aa17.12■□□□□ 0.33
LIG1-212ENST00000596549 PROSER3Q2NL68 480 aa17.12■□□□□ 0.33
LIG1-212ENST00000596549 NBPF5PQ86XG9 351 aaPredicted RBP17.12■□□□□ 0.33
LIG1-212ENST00000596549 RNF181Q9P0P0 153 aa17.12■□□□□ 0.33
LIG1-212ENST00000596549 UBN2Q6ZU65 1347 aa17.12■□□□□ 0.33
LIG1-212ENST00000596549 RIC1Q4ADV7 1423 aa17.12■□□□□ 0.33
LIG1-212ENST00000596549 ERVV-1B6SEH8 477 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 CHL1O00533 1208 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 NPHP1O15259 732 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 ANXA1P04083 346 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 SRGNP10124 158 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 IFFO2Q5TF58 517 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 ZNF622Q969S3 477 aaKnown RBP eCLIP17.11■□□□□ 0.338e-7■■□□□ 11.8
LIG1-212ENST00000596549 ZBTB3Q9H5J0 574 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 PDZRN3Q9UPQ7 1066 aa17.11■□□□□ 0.33
LIG1-212ENST00000596549 IBTKQ9P2D0 1353 aaPredicted RBP17.11■□□□□ 0.33
LIG1-212ENST00000596549 FAM177BA6PVY3 158 aa17.1■□□□□ 0.33
LIG1-212ENST00000596549 KIF6Q6ZMV9 814 aa17.1■□□□□ 0.33
LIG1-212ENST00000596549 EIF2S2P20042 333 aaKnown RBP17.09■□□□□ 0.33
LIG1-212ENST00000596549 STYK1Q6J9G0 422 aa17.09■□□□□ 0.33
LIG1-212ENST00000596549 PRPF40BQ6NWY9 871 aaKnown RBP17.09■□□□□ 0.33
LIG1-212ENST00000596549 WDR90Q96KV7 1748 aa17.09■□□□□ 0.33
LIG1-212ENST00000596549 SNED1Q8TER0 1413 aa17.08■□□□□ 0.32
LIG1-212ENST00000596549 SENP3-EIF4A1A0A087X0R7 540 aa17.08■□□□□ 0.32
LIG1-212ENST00000596549 KLRG2A4D1S0 409 aaPredicted RBP17.08■□□□□ 0.32
LIG1-212ENST00000596549 APAF1O14727 1248 aa17.08■□□□□ 0.32
LIG1-212ENST00000596549 C21orf2O43822 256 aa17.08■□□□□ 0.32
LIG1-212ENST00000596549 NECTIN2Q92692 538 aa17.08■□□□□ 0.32
LIG1-212ENST00000596549 MASTLQ96GX5 879 aa17.08■□□□□ 0.32
LIG1-212ENST00000596549 NMRK2Q9NPI5 230 aa17.08■□□□□ 0.32
LIG1-212ENST00000596549 LAS1LQ9Y4W2 734 aaKnown RBP17.08■□□□□ 0.32
LIG1-212ENST00000596549 ZNF316A6NFI3 1004 aaPredicted RBP17.07■□□□□ 0.32
LIG1-212ENST00000596549 GPTP24298 496 aa17.07■□□□□ 0.32
LIG1-212ENST00000596549 GIGYF2Q6Y7W6 1299 aaKnown RBP17.07■□□□□ 0.32
LIG1-212ENST00000596549 NUTM1Q86Y26 1132 aa17.07■□□□□ 0.32
LIG1-212ENST00000596549 ZNF219Q9P2Y4 722 aaPredicted RBP17.07■□□□□ 0.32
LIG1-212ENST00000596549 ZC3H4Q9UPT8 1303 aaKnown RBP17.06■□□□□ 0.32
LIG1-212ENST00000596549 NTSR2O95665 410 aa17.06■□□□□ 0.32
LIG1-212ENST00000596549 LMNB1P20700 586 aa17.06■□□□□ 0.32
LIG1-212ENST00000596549 TPTE2Q6XPS3 522 aa17.06■□□□□ 0.32
LIG1-212ENST00000596549 ZNF34Q8IZ26 560 aa17.06■□□□□ 0.32
LIG1-212ENST00000596549 CFAP44Q96MT7 982 aa17.06■□□□□ 0.32
LIG1-212ENST00000596549 MBIPQ9NS73 344 aa17.06■□□□□ 0.32
LIG1-212ENST00000596549 TAF1P21675 1872 aa17.05■□□□□ 0.32
LIG1-212ENST00000596549 LTBP3Q9NS15 1303 aa17.05■□□□□ 0.32
LIG1-212ENST00000596549 ZNF853P0CG23 659 aa17.05■□□□□ 0.32
LIG1-212ENST00000596549 SUSD4Q5VX71 490 aa17.05■□□□□ 0.32
LIG1-212ENST00000596549 CNKSR1Q969H4 720 aa17.05■□□□□ 0.32
LIG1-212ENST00000596549 NPR1P16066 1061 aa17.04■□□□□ 0.32
LIG1-212ENST00000596549 ERFEQ4G0M1 354 aa17.04■□□□□ 0.32
LIG1-212ENST00000596549 C7orf43Q8WVR3 580 aa17.04■□□□□ 0.32
LIG1-212ENST00000596549 CHPF2Q9P2E5 772 aa17.04■□□□□ 0.32
LIG1-212ENST00000596549 LRRC37AA6NMS7 1700 aa17.04■□□□□ 0.32
LIG1-212ENST00000596549 HOXB7P09629 217 aa17.03■□□□□ 0.32
LIG1-212ENST00000596549 CRY2Q49AN0 593 aa17.03■□□□□ 0.32
LIG1-212ENST00000596549 XAGE3Q8WTP9 111 aa17.03■□□□□ 0.32
LIG1-212ENST00000596549 NYXQ9GZU5 481 aa17.03■□□□□ 0.32
LIG1-212ENST00000596549 DDX21Q9NR30 783 aaKnown RBP eCLIP17.03■□□□□ 0.32
LIG1-212ENST00000596549 COL4A1P02462 1669 aa17.02■□□□□ 0.32
LIG1-212ENST00000596549 COL4A5P29400 1685 aa17.02■□□□□ 0.32
LIG1-212ENST00000596549 HDGFL1Q5TGJ6 251 aa17.02■□□□□ 0.32
LIG1-212ENST00000596549 OLFM4Q6UX06 510 aa17.02■□□□□ 0.32
LIG1-212ENST00000596549 COPS6Q7L5N1 327 aa17.02■□□□□ 0.32
LIG1-212ENST00000596549 IFT57Q9NWB7 429 aa17.02■□□□□ 0.32
LIG1-212ENST00000596549 KDM2BQ8NHM5 1336 aa17.01■□□□□ 0.31
LIG1-212ENST00000596549 AIMP1Q12904 312 aaKnown RBP17.01■□□□□ 0.31
LIG1-212ENST00000596549 C3orf67Q6ZVT6 689 aa17.01■□□□□ 0.31
LIG1-212ENST00000596549 SLC51AQ86UW1 340 aa17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms