RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 MCM4P33991 863 aa24.08■■□□□ 1.45
CLIP3-206ENST00000593074 SHANK3Q9BYB0 1731 aa24.08■■□□□ 1.44
CLIP3-206ENST00000593074 NEXNQ0ZGT2 675 aa24.07■■□□□ 1.44
CLIP3-206ENST00000593074 KAZALD1Q96I82 304 aa24.07■■□□□ 1.44
CLIP3-206ENST00000593074 AK9Q5TCS8 1911 aa24.07■■□□□ 1.44
CLIP3-206ENST00000593074 SUCLG2Q96I99 432 aa24.07■■□□□ 1.44
CLIP3-206ENST00000593074 PAPPAQ13219 1627 aa24.07■■□□□ 1.44
CLIP3-206ENST00000593074 NEURL1BA8MQ27 555 aa24.06■■□□□ 1.44
CLIP3-206ENST00000593074 METTL22Q9BUU2 404 aaPredicted RBP24.06■■□□□ 1.44
CLIP3-206ENST00000593074 HSP90AA1P07900 732 aaKnown RBP24.06■■□□□ 1.44
CLIP3-206ENST00000593074 ANKRD13DQ6ZTN6 518 aa24.06■■□□□ 1.44
CLIP3-206ENST00000593074 ERC1Q8IUD2 1116 aa24.06■■□□□ 1.44
CLIP3-206ENST00000593074 TTC41PQ6P2S7 1318 aa24.05■■□□□ 1.44
CLIP3-206ENST00000593074 ARFGEF2Q9Y6D5 1785 aa24.05■■□□□ 1.44
CLIP3-206ENST00000593074 ROBO1Q9Y6N7 1651 aa24.05■■□□□ 1.44
CLIP3-206ENST00000593074 OS9Q13438 667 aaPredicted RBP24.04■■□□□ 1.44
CLIP3-206ENST00000593074 BICC1Q9H694 974 aaKnown RBP24.04■■□□□ 1.44
CLIP3-206ENST00000593074 EPB41L2O43491 1005 aaKnown RBP24.04■■□□□ 1.44
CLIP3-206ENST00000593074 RAB3GAP1Q15042 981 aa24.04■■□□□ 1.44
CLIP3-206ENST00000593074 ST18O60284 1047 aa24.03■■□□□ 1.44
CLIP3-206ENST00000593074 GCKRQ14397 625 aa24.03■■□□□ 1.44
CLIP3-206ENST00000593074 PIP4K2AP48426 406 aaPredicted RBP24.03■■□□□ 1.44
CLIP3-206ENST00000593074 IL17RAQ96F46 866 aa24.03■■□□□ 1.44
CLIP3-206ENST00000593074 AHDC1Q5TGY3 1603 aaPredicted RBP24.02■■□□□ 1.44
CLIP3-206ENST00000593074 ERBB4Q15303 1308 aa24.02■■□□□ 1.44
CLIP3-206ENST00000593074 CLASRPQ8N2M8 674 aaKnown RBP24.02■■□□□ 1.44
CLIP3-206ENST00000593074 MYD88Q99836 296 aa24.02■■□□□ 1.44
CLIP3-206ENST00000593074 PA2G4Q9UQ80 394 aaKnown RBP24.02■■□□□ 1.44
CLIP3-206ENST00000593074 KCPQ6ZWJ8 1503 aa24.02■■□□□ 1.44
CLIP3-206ENST00000593074 ANAPC15P60006 121 aa24.01■■□□□ 1.43
CLIP3-206ENST00000593074 COL15A1P39059 1388 aa24■■□□□ 1.43
CLIP3-206ENST00000593074 AFDNP55196 1824 aaKnown RBP24■■□□□ 1.43
CLIP3-206ENST00000593074 GLRX3O76003 335 aaKnown RBP24■■□□□ 1.43
CLIP3-206ENST00000593074 MCCP23508 829 aa24■■□□□ 1.43
CLIP3-206ENST00000593074 CNTROBQ8N137 903 aa24■■□□□ 1.43
CLIP3-206ENST00000593074 ANO2Q9NQ90 1003 aa24■■□□□ 1.43
CLIP3-206ENST00000593074 LTBP4Q8N2S1 1624 aa23.99■■□□□ 1.43
CLIP3-206ENST00000593074 TNPO1Q92973 898 aaKnown RBP23.99■■□□□ 1.43
CLIP3-206ENST00000593074 DDX11L8A8MPP1 907 aa23.99■■□□□ 1.43
CLIP3-206ENST00000593074 FOXD4L1Q9NU39 408 aa23.99■■□□□ 1.43
CLIP3-206ENST00000593074 COL14A1Q05707 1796 aaKnown RBP23.98■■□□□ 1.43
CLIP3-206ENST00000593074 PTCD1O75127 700 aaKnown RBP23.98■■□□□ 1.43
CLIP3-206ENST00000593074 TMOD3Q9NYL9 352 aa23.98■■□□□ 1.43
CLIP3-206ENST00000593074 TNS2Q63HR2 1409 aa23.98■■□□□ 1.43
CLIP3-206ENST00000593074 PLBD2Q8NHP8 589 aa23.98■■□□□ 1.43
CLIP3-206ENST00000593074 IL25Q9H293 177 aa23.98■■□□□ 1.43
CLIP3-206ENST00000593074 NBPF26B4DH59 902 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 MAP4K4O95819 1239 aaPredicted RBP23.96■■□□□ 1.43
CLIP3-206ENST00000593074 NBPF14Q5TI25 921 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 NBPF10Q6P3W6 841 aaKnown RBP23.96■■□□□ 1.43
CLIP3-206ENST00000593074 NBPF15Q8N660 670 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 GPATCH3Q96I76 525 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 ECHDC1Q9NTX5 307 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 TOGARAM1Q9Y4F4 1720 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 COL22A1Q8NFW1 1626 aaPredicted RBP23.96■■□□□ 1.43
CLIP3-206ENST00000593074 SGSM2O43147 1006 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 SASH1O94885 1247 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 PALD1Q9ULE6 856 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 NUP188Q5SRE5 1749 aa23.96■■□□□ 1.43
CLIP3-206ENST00000593074 IFIT2P09913 472 aaKnown RBP23.95■■□□□ 1.42
CLIP3-206ENST00000593074 G3BP1Q13283 466 aaKnown RBP eCLIP23.95■■□□□ 1.42
CLIP3-206ENST00000593074 GBP4Q96PP9 640 aa23.95■■□□□ 1.42
CLIP3-206ENST00000593074 EPHA10Q5JZY3 1008 aa23.94■■□□□ 1.42
CLIP3-206ENST00000593074 A1BGP04217 495 aa23.93■■□□□ 1.42
CLIP3-206ENST00000593074 RAD50Q92878 1312 aa23.93■■□□□ 1.42
CLIP3-206ENST00000593074 RABL6Q3YEC7 729 aaPredicted RBP23.93■■□□□ 1.42
CLIP3-206ENST00000593074 CLEC17AQ6ZS10 378 aa23.93■■□□□ 1.42
CLIP3-206ENST00000593074 AACSQ86V21 672 aa23.93■■□□□ 1.42
CLIP3-206ENST00000593074 DISP2A7MBM2 1401 aa23.93■■□□□ 1.42
CLIP3-206ENST00000593074 EXOC5O00471 708 aa23.92■■□□□ 1.42
CLIP3-206ENST00000593074 HSPA4P34932 840 aa23.92■■□□□ 1.42
CLIP3-206ENST00000593074 MCM2P49736 904 aa23.92■■□□□ 1.42
CLIP3-206ENST00000593074 CWC22Q9HCG8 908 aaKnown RBP23.92■■□□□ 1.42
CLIP3-206ENST00000593074 NEK4P51957 841 aa23.91■■□□□ 1.42
CLIP3-206ENST00000593074 PIGBQ92521 554 aa23.91■■□□□ 1.42
CLIP3-206ENST00000593074 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.91■■□□□ 1.42
CLIP3-206ENST00000593074 IL27Q8NEV9 243 aa23.91■■□□□ 1.42
CLIP3-206ENST00000593074 EAF2Q96CJ1 260 aaPredicted RBP23.91■■□□□ 1.42
CLIP3-206ENST00000593074 ATP5J2-PTCD1G3V325 749 aa23.9■■□□□ 1.42
CLIP3-206ENST00000593074 TRAK2O60296 914 aa23.9■■□□□ 1.42
CLIP3-206ENST00000593074 CASP7P55210 303 aa23.9■■□□□ 1.42
CLIP3-206ENST00000593074 COPRSQ9NQ92 184 aa23.9■■□□□ 1.42
CLIP3-206ENST00000593074 COL16A1Q07092 1604 aaPredicted RBP23.9■■□□□ 1.42
CLIP3-206ENST00000593074 UBE3BQ7Z3V4 1068 aa23.9■■□□□ 1.42
CLIP3-206ENST00000593074 TEX13AQ9BXU3 409 aaPredicted RBP23.9■■□□□ 1.42
CLIP3-206ENST00000593074 ADAMTS2O95450 1211 aa23.89■■□□□ 1.41
CLIP3-206ENST00000593074 SSFA2P28290 1259 aa23.89■■□□□ 1.41
CLIP3-206ENST00000593074 RFX5P48382 616 aaPredicted RBP23.89■■□□□ 1.41
CLIP3-206ENST00000593074 TTLL7Q6ZT98 887 aa23.89■■□□□ 1.41
CLIP3-206ENST00000593074 LSG1Q9H089 658 aaKnown RBP23.89■■□□□ 1.41
CLIP3-206ENST00000593074 ASAP1Q9ULH1 1129 aa23.89■■□□□ 1.41
CLIP3-206ENST00000593074 TJP1Q07157 1748 aa23.89■■□□□ 1.41
CLIP3-206ENST00000593074 A0A087WZG4 1122 aa23.88■■□□□ 1.41
CLIP3-206ENST00000593074 CYP2E1P05181 493 aaPredicted RBP23.88■■□□□ 1.41
CLIP3-206ENST00000593074 VSIG10Q8N0Z9 540 aa23.88■■□□□ 1.41
CLIP3-206ENST00000593074 EVI5LQ96CN4 794 aa23.88■■□□□ 1.41
CLIP3-206ENST00000593074 SIL1Q9H173 461 aa23.88■■□□□ 1.41
CLIP3-206ENST00000593074 NUCB2P80303 420 aa23.88■■□□□ 1.41
CLIP3-206ENST00000593074 KLHDC4Q8TBB5 520 aa23.88■■□□□ 1.41
CLIP3-206ENST00000593074 ATG3Q9NT62 314 aa23.88■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms