RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, humanhuman

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-215ENST00000592911 AEBP1Q8IUX7 1158 aa11.84□□□□□ -0.51
SMAD4-215ENST00000592911 PCDH10Q9P2E7 1040 aa11.84□□□□□ -0.51
SMAD4-215ENST00000592911 SIPA1L3O60292 1781 aaPredicted RBP11.84□□□□□ -0.51
SMAD4-215ENST00000592911 BCORQ6W2J9 1755 aa11.84□□□□□ -0.51
SMAD4-215ENST00000592911 ADAMTSL1Q8N6G6 1762 aa11.84□□□□□ -0.51
SMAD4-215ENST00000592911 TMEM88BA6NKF7 163 aa11.83□□□□□ -0.52
SMAD4-215ENST00000592911 PRR29P0C7W0 189 aa11.83□□□□□ -0.52
SMAD4-215ENST00000592911 IL6STP40189 918 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-215ENST00000592911 VASPP50552 380 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-215ENST00000592911 MORC1Q86VD1 984 aa11.83□□□□□ -0.52
SMAD4-215ENST00000592911 CACNA1SQ13698 1873 aa11.83□□□□□ -0.52
SMAD4-215ENST00000592911 FOXN1O15353 648 aa11.82□□□□□ -0.52
SMAD4-215ENST00000592911 MAP2K1Q02750 393 aaPredicted RBP11.82□□□□□ -0.52
SMAD4-215ENST00000592911 CHRDL2Q6WN34 429 aa11.82□□□□□ -0.52
SMAD4-215ENST00000592911 PNMA8AQ86V59 439 aaPredicted RBP11.82□□□□□ -0.52
SMAD4-215ENST00000592911 TTC5Q8N0Z6 440 aa11.82□□□□□ -0.52
SMAD4-215ENST00000592911 MASTLQ96GX5 879 aa11.82□□□□□ -0.52
SMAD4-215ENST00000592911 WBP1LQ9NX94 342 aa11.82□□□□□ -0.52
SMAD4-215ENST00000592911 THSD7BQ9C0I4 1608 aa11.82□□□□□ -0.52
SMAD4-215ENST00000592911 RASSF10A6NK89 507 aa11.81□□□□□ -0.52
SMAD4-215ENST00000592911 ST5P78524 1137 aa11.81□□□□□ -0.52
SMAD4-215ENST00000592911 PRR5LQ6MZQ0 368 aa11.81□□□□□ -0.52
SMAD4-215ENST00000592911 CLEC4GQ6UXB4 293 aa11.81□□□□□ -0.52
SMAD4-215ENST00000592911 NPM2Q86SE8 214 aaKnown RBP11.81□□□□□ -0.52
SMAD4-215ENST00000592911 CNBD1Q8NA66 436 aa11.81□□□□□ -0.52
SMAD4-215ENST00000592911 ZNF622Q969S3 477 aaKnown RBP eCLIP11.81□□□□□ -0.52
SMAD4-215ENST00000592911 PANK3Q9H999 370 aa11.81□□□□□ -0.52
SMAD4-215ENST00000592911 MKRN1Q9UHC7 482 aaKnown RBP11.81□□□□□ -0.52
SMAD4-215ENST00000592911 HEG1Q9ULI3 1381 aa11.8□□□□□ -0.52
SMAD4-215ENST00000592911 C21orf2O43822 256 aa11.8□□□□□ -0.52
SMAD4-215ENST00000592911 SRGNP10124 158 aa11.8□□□□□ -0.52
SMAD4-215ENST00000592911 GRIPAP1Q4V328 841 aa11.8□□□□□ -0.52
SMAD4-215ENST00000592911 CCDC93Q567U6 631 aa11.8□□□□□ -0.52
SMAD4-215ENST00000592911 SETDB2Q96T68 719 aa11.8□□□□□ -0.52
SMAD4-215ENST00000592911 TAF1DQ9H5J8 278 aaPredicted RBP11.8□□□□□ -0.52
SMAD4-215ENST00000592911 TRPM7Q96QT4 1865 aa11.8□□□□□ -0.52
SMAD4-215ENST00000592911 PDE4DIPQ5VU43 2346 aa11.79□□□□□ -0.52
SMAD4-215ENST00000592911 KLRG2A4D1S0 409 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-215ENST00000592911 ITGBL1O95965 494 aaPredicted RBP11.79□□□□□ -0.52
SMAD4-215ENST00000592911 TBC1D9BQ66K14 1250 aa11.79□□□□□ -0.52
SMAD4-215ENST00000592911 PRPF40BQ6NWY9 871 aaKnown RBP11.79□□□□□ -0.52
SMAD4-215ENST00000592911 RTKN2Q8IZC4 609 aa11.79□□□□□ -0.52
SMAD4-215ENST00000592911 LGR6Q9HBX8 967 aa11.79□□□□□ -0.52
SMAD4-215ENST00000592911 KNSTRNQ9Y448 316 aa11.79□□□□□ -0.52
SMAD4-215ENST00000592911 DDNO94850 711 aaPredicted RBP11.78□□□□□ -0.52
SMAD4-215ENST00000592911 CANXP27824 592 aaKnown RBP11.78□□□□□ -0.52
SMAD4-215ENST00000592911 VEGFBP49765 207 aa11.78□□□□□ -0.52
SMAD4-215ENST00000592911 EIF4G2P78344 907 aaKnown RBP eCLIP11.78□□□□□ -0.52
SMAD4-215ENST00000592911 SLC39A6Q13433 755 aa11.78□□□□□ -0.52
SMAD4-215ENST00000592911 ZNF790Q6PG37 636 aa11.78□□□□□ -0.52
SMAD4-215ENST00000592911 C7orf43Q8WVR3 580 aa11.78□□□□□ -0.52
SMAD4-215ENST00000592911 HACL1Q9UJ83 578 aa11.78□□□□□ -0.52
SMAD4-215ENST00000592911 ZNF652Q9Y2D9 606 aa11.78□□□□□ -0.52
SMAD4-215ENST00000592911 NPR1P16066 1061 aa11.77□□□□□ -0.53
SMAD4-215ENST00000592911 RGS19P49795 217 aa11.77□□□□□ -0.53
SMAD4-215ENST00000592911 FKBP4Q02790 459 aaKnown RBP eCLIP11.77□□□□□ -0.53
SMAD4-215ENST00000592911 GAS2L2Q8NHY3 880 aa11.77□□□□□ -0.53
SMAD4-215ENST00000592911 FMNL2Q96PY5 1086 aa11.77□□□□□ -0.53
SMAD4-215ENST00000592911 FZD9O00144 591 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 NPHP1O15259 732 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 CAMTA2O94983 1202 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 ECE1P42892 770 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 TEFQ10587 303 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 MTHFSDQ2M296 383 aaKnown RBP11.76□□□□□ -0.53
SMAD4-215ENST00000592911 DEFB115Q30KQ5 88 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 CC2D2BQ6DHV5 1058 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 GPC2Q8N158 579 aa11.76□□□□□ -0.53
SMAD4-215ENST00000592911 CA12O43570 354 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 HSPA8P11142 646 aaKnown RBP11.75□□□□□ -0.53
SMAD4-215ENST00000592911 ALDH1B1P30837 517 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 EPHX2P34913 555 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 AMER1Q5JTC6 1135 aaPredicted RBP11.75□□□□□ -0.53
SMAD4-215ENST00000592911 BICDL1Q6ZP65 573 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 MIER1Q8N108 512 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 ABHD8Q96I13 439 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 ZNF496Q96IT1 587 aaPredicted RBP11.75□□□□□ -0.53
SMAD4-215ENST00000592911 PSMD1Q99460 953 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 CEMIPQ8WUJ3 1361 aa11.75□□□□□ -0.53
SMAD4-215ENST00000592911 GNAT3A8MTJ3 354 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 DIAPH1O60610 1272 aaKnown RBP11.74□□□□□ -0.53
SMAD4-215ENST00000592911 POTEIP0CG38 1075 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 POTEJP0CG39 1038 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 LBX1P52954 281 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 TPTE2Q6XPS3 522 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 BEGAINQ9BUH8 593 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 WDR33Q9C0J8 1336 aaKnown RBP11.74□□□□□ -0.53
SMAD4-215ENST00000592911 NPC1L1Q9UHC9 1359 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 RIC1Q4ADV7 1423 aa11.74□□□□□ -0.53
SMAD4-215ENST00000592911 FXR2P51116 673 aaKnown RBP eCLIP11.73□□□□□ -0.53
SMAD4-215ENST00000592911 NBPF5PQ86XG9 351 aaPredicted RBP11.73□□□□□ -0.53
SMAD4-215ENST00000592911 CNTROBQ8N137 903 aa11.73□□□□□ -0.53
SMAD4-215ENST00000592911 POLR3GLQ9BT43 218 aa11.73□□□□□ -0.53
SMAD4-215ENST00000592911 SNED1Q8TER0 1413 aa11.72□□□□□ -0.53
SMAD4-215ENST00000592911 MAP2K2P36507 400 aa11.72□□□□□ -0.53
SMAD4-215ENST00000592911 IARSP41252 1262 aaKnown RBP11.72□□□□□ -0.53
SMAD4-215ENST00000592911 MLLT1Q03111 559 aaPredicted RBP11.72□□□□□ -0.53
SMAD4-215ENST00000592911 DZIP3Q86Y13 1208 aaKnown RBP11.72□□□□□ -0.53
SMAD4-215ENST00000592911 PLCD3Q8N3E9 789 aa11.72□□□□□ -0.53
SMAD4-215ENST00000592911 HHIPL1Q96JK4 782 aa11.72□□□□□ -0.53
SMAD4-215ENST00000592911 VPS33BQ9H267 617 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms