RNA–Protein interactions for RNA: ENST00000584796.5

VAPA-208, Transcript of VAMP associated protein A, human

TSL 3

Gene VAPA, Length 654 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VAPA-208	ENST00000584796	GRIN2C	Q14957	1233 aa		6.67	□□□□□ -1.34
VAPA-208	ENST00000584796	TBCEL	Q5QJ74	424 aa		6.67	□□□□□ -1.34
VAPA-208	ENST00000584796	HDGFL1	Q5TGJ6	251 aa		6.67	□□□□□ -1.34
VAPA-208	ENST00000584796	CCDC102B	Q68D86	513 aa		6.67	□□□□□ -1.34
VAPA-208	ENST00000584796	MDFI	Q99750	246 aa		6.67	□□□□□ -1.34
VAPA-208	ENST00000584796	SERTM1	A2A2V5	107 aa		6.66	□□□□□ -1.34
VAPA-208	ENST00000584796		M0R2N6	131 aa		6.66	□□□□□ -1.34
VAPA-208	ENST00000584796	PCBP4	P57723	403 aa	Known RBP	6.66	□□□□□ -1.34
VAPA-208	ENST00000584796	SH3PXD2A	Q5TCZ1	1133 aa		6.66	□□□□□ -1.34
VAPA-208	ENST00000584796	LRRC69	Q6ZNQ3	347 aa		6.66	□□□□□ -1.34
VAPA-208	ENST00000584796	LARGE2	Q8N3Y3	721 aa		6.66	□□□□□ -1.34
VAPA-208	ENST00000584796	ZNF232	Q9UNY5	417 aa		6.66	□□□□□ -1.34
VAPA-208	ENST00000584796	DKK1	O94907	266 aa		6.65	□□□□□ -1.34
VAPA-208	ENST00000584796	PSMA6	P60900	246 aa	Known RBP	6.65	□□□□□ -1.34
VAPA-208	ENST00000584796	SIX5	Q8N196	739 aa		6.65	□□□□□ -1.34
VAPA-208	ENST00000584796	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	6.65	□□□□□ -1.34
VAPA-208	ENST00000584796	NOP53	Q9NZM5	478 aa	Known RBP	6.65	□□□□□ -1.34
VAPA-208	ENST00000584796	PRR12	Q9ULL5	1215 aa		6.65	□□□□□ -1.34
VAPA-208	ENST00000584796	PALM3	A6NDB9	673 aa	Predicted RBP	6.64	□□□□□ -1.35
VAPA-208	ENST00000584796	BAG6	P46379	1132 aa		6.64	□□□□□ -1.35
VAPA-208	ENST00000584796	C1orf53	Q5VUE5	145 aa		6.64	□□□□□ -1.35
VAPA-208	ENST00000584796	OGFOD1	Q8N543	542 aa		6.64	□□□□□ -1.35
VAPA-208	ENST00000584796	MKRN1	Q9UHC7	482 aa	Known RBP	6.64	□□□□□ -1.35
VAPA-208	ENST00000584796	ELOA3C	A0A087WX78	387 aa	Predicted RBP	6.63	□□□□□ -1.35
VAPA-208	ENST00000584796	ELOA3D	A6NLF2	546 aa	Predicted RBP	6.63	□□□□□ -1.35
VAPA-208	ENST00000584796	ELOA3B	Q3SY89	546 aa		6.63	□□□□□ -1.35
VAPA-208	ENST00000584796	SYT9	Q86SS6	491 aa		6.63	□□□□□ -1.35
VAPA-208	ENST00000584796	FNBP4	Q8N3X1	1017 aa	Predicted RBP	6.63	□□□□□ -1.35
VAPA-208	ENST00000584796	ELOA3	Q8NG57	546 aa		6.63	□□□□□ -1.35
VAPA-208	ENST00000584796	RHPN1	Q8TCX5	695 aa		6.63	□□□□□ -1.35
VAPA-208	ENST00000584796	ADARB2-AS1	A8MUL3	147 aa		6.62	□□□□□ -1.35
VAPA-208	ENST00000584796	SIN3B	O75182	1162 aa		6.62	□□□□□ -1.35
VAPA-208	ENST00000584796	SFSWAP	Q12872	951 aa	Known RBP	6.62	□□□□□ -1.35
VAPA-208	ENST00000584796	CD163	Q86VB7	1156 aa		6.62	□□□□□ -1.35
VAPA-208	ENST00000584796	TRIM11	Q96F44	468 aa		6.62	□□□□□ -1.35
VAPA-208	ENST00000584796	C1QTNF9B	B2RNN3	333 aa		6.61	□□□□□ -1.35
VAPA-208	ENST00000584796		K7ELQ4	463 aa	Predicted RBP	6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	C21orf2	O43822	256 aa		6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	KCNQ4	P56696	695 aa		6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	TSEN2	Q8NCE0	465 aa	Known RBP	6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	TNFRSF25	Q93038	417 aa		6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	SLC30A3	Q99726	388 aa		6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	PHACTR1	Q9C0D0	580 aa		6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	NEUROD4	Q9HD90	331 aa		6.61	□□□□□ -1.35
VAPA-208	ENST00000584796	CHRNA4	P43681	627 aa		6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	PROSER2	Q86WR7	435 aa	Predicted RBP	6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	STAG2	Q8N3U4	1231 aa		6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	GLMN	Q92990	594 aa		6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	CLUAP1	Q96AJ1	413 aa		6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	ZNF594	Q96JF6	807 aa	Predicted RBP	6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	ANKIB1	Q9P2G1	1089 aa		6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	CHMP3	Q9Y3E7	222 aa		6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	HCN4	Q9Y3Q4	1203 aa		6.6	□□□□□ -1.35
VAPA-208	ENST00000584796	SFI1	A8K8P3	1242 aa		6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	PPP1R12B	O60237	982 aa	Predicted RBP	6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	ALAS2	P22557	587 aa		6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	TYRO3	Q06418	890 aa		6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	SPEM2	Q0P670	501 aa		6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	HSH2D	Q96JZ2	352 aa		6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	PLVAP	Q9BX97	442 aa		6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	BRD7	Q9NPI1	651 aa		6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	MAFB	Q9Y5Q3	323 aa	Predicted RBP	6.59	□□□□□ -1.35
VAPA-208	ENST00000584796	SPATA31C1	P0DKV0	1188 aa		6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	COL9A3	Q14050	684 aa	Predicted RBP	6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	ZNF280C	Q8ND82	737 aa		6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	GAS2L2	Q8NHY3	880 aa		6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	SUSD3	Q96L08	255 aa		6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	CEP63	Q96MT8	703 aa		6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	C2orf49	Q9BVC5	232 aa	Predicted RBP	6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	PRDM6	Q9NQX0	595 aa		6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	TFIP11	Q9UBB9	837 aa	Known RBP	6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	STARD13	Q9Y3M8	1113 aa		6.58	□□□□□ -1.36
VAPA-208	ENST00000584796	FURIN	P09958	794 aa		6.57	□□□□□ -1.36
VAPA-208	ENST00000584796	RASA1	P20936	1047 aa		6.57	□□□□□ -1.36
VAPA-208	ENST00000584796	SEC13	P55735	322 aa		6.57	□□□□□ -1.36
VAPA-208	ENST00000584796	TMEM132A	Q24JP5	1023 aa		6.57	□□□□□ -1.36
VAPA-208	ENST00000584796	ALDH16A1	Q8IZ83	802 aa		6.57	□□□□□ -1.36
VAPA-208	ENST00000584796	RBM19	Q9Y4C8	960 aa	Known RBP	6.57	□□□□□ -1.36
VAPA-208	ENST00000584796	ATAD2	Q6PL18	1390 aa		6.57	□□□□□ -1.36
VAPA-208	ENST00000584796	ADH7	P40394	386 aa		6.56	□□□□□ -1.36
VAPA-208	ENST00000584796	NEUROD1	Q13562	356 aa		6.56	□□□□□ -1.36
VAPA-208	ENST00000584796	KCNH4	Q9UQ05	1017 aa		6.56	□□□□□ -1.36
VAPA-208	ENST00000584796	SPDYE3	A6NKU9	549 aa		6.55	□□□□□ -1.36
VAPA-208	ENST00000584796		M0R082	166 aa		6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	ALB	P02768	609 aa		6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	CRTC2	Q53ET0	693 aa	Predicted RBP	6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	RAB44	Q7Z6P3	723 aa	Predicted RBP	6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	MICALL1	Q8N3F8	863 aa		6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	ZNF417	Q8TAU3	575 aa		6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	SCG3	Q8WXD2	468 aa	Known RBP	6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	ZNF587	Q96SQ5	575 aa	Predicted RBP	6.55	□□□□□ -1.36
VAPA-208	ENST00000584796	PPP1R12C	Q9BZL4	782 aa		6.55	□□□□□ -1.36
VAPA-208	ENST00000584796		A6NJR5	290 aa		6.54	□□□□□ -1.36
VAPA-208	ENST00000584796	PTK7	Q13308	1070 aa		6.54	□□□□□ -1.36
VAPA-208	ENST00000584796	HIF1A	Q16665	826 aa		6.54	□□□□□ -1.36
VAPA-208	ENST00000584796	KANK4	Q5T7N3	995 aa	Predicted RBP	6.54	□□□□□ -1.36
VAPA-208	ENST00000584796	IER5	Q5VY09	327 aa		6.54	□□□□□ -1.36
VAPA-208	ENST00000584796	C20orf204	Q6ZNR8	217 aa		6.54	□□□□□ -1.36
VAPA-208	ENST00000584796	BTLA	Q7Z6A9	289 aa		6.54	□□□□□ -1.36
VAPA-208	ENST00000584796	NID1	P14543	1247 aa		6.53	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms