RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 IRX6P78412 446 aaPredicted RBP13.6□□□□□ -0.23
SS18-213ENST00000579640 FKBP8Q14318 412 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 TMEM57Q8N5G2 664 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 AK7Q96M32 723 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 CHMP4BQ9H444 224 aaKnown RBP13.6□□□□□ -0.23
SS18-213ENST00000579640 DDX19BQ9UMR2 479 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 MAP3K2Q9Y2U5 619 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 ZNF330Q9Y3S2 320 aaPredicted RBP13.6□□□□□ -0.23
SS18-213ENST00000579640 ATP10DQ9P241 1426 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 AAMPQ13685 434 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 TTLL7Q6ZT98 887 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 CAMKK2Q96RR4 588 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 CRBNQ96SW2 442 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 COG6Q9Y2V7 657 aa13.6□□□□□ -0.23
SS18-213ENST00000579640 RTCBQ9Y3I0 505 aaKnown RBP13.6□□□□□ -0.23
SS18-213ENST00000579640 EP400Q96L91 3159 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 COL15A1P39059 1388 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 ARFGEF2Q9Y6D5 1785 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 ERVV-1B6SEH8 477 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 GNPATO15228 680 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 NEXNQ0ZGT2 675 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 SLC4A10Q6U841 1118 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 ITPRIPQ8IWB1 547 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 MAP3K15Q6ZN16 1313 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 NUP188Q5SRE5 1749 aa13.59□□□□□ -0.23
SS18-213ENST00000579640 IBTKQ9P2D0 1353 aaPredicted RBP13.58□□□□□ -0.23
SS18-213ENST00000579640 RGL2O15211 777 aa13.58□□□□□ -0.24
SS18-213ENST00000579640 ADRA2BP18089 450 aa13.58□□□□□ -0.24
SS18-213ENST00000579640 DZIP3Q86Y13 1208 aaKnown RBP13.58□□□□□ -0.24
SS18-213ENST00000579640 METTL22Q9BUU2 404 aaPredicted RBP13.58□□□□□ -0.24
SS18-213ENST00000579640 EN1Q05925 392 aaPredicted RBP13.57□□□□□ -0.24
SS18-213ENST00000579640 BEND3Q5T5X7 828 aa13.57□□□□□ -0.24
SS18-213ENST00000579640 SRCIN1Q9C0H9 1055 aa13.57□□□□□ -0.24
SS18-213ENST00000579640 ALDH1L1O75891 902 aa13.57□□□□□ -0.24
SS18-213ENST00000579640 EZH2Q15910 746 aaKnown RBP13.57□□□□□ -0.24
SS18-213ENST00000579640 HSP90AB3PQ58FF7 597 aa13.57□□□□□ -0.24
SS18-213ENST00000579640 LINS1Q8NG48 757 aa13.57□□□□□ -0.24
SS18-213ENST00000579640 EXOC6Q8TAG9 804 aa13.57□□□□□ -0.24
SS18-213ENST00000579640 ZBTB3Q9H5J0 574 aa13.57□□□□□ -0.24
SS18-213ENST00000579640 UBR3Q6ZT12 1888 aa13.56□□□□□ -0.24
SS18-213ENST00000579640 SSFA2P28290 1259 aa13.56□□□□□ -0.24
SS18-213ENST00000579640 GIGYF2Q6Y7W6 1299 aaKnown RBP13.56□□□□□ -0.24
SS18-213ENST00000579640 ARXQ96QS3 562 aa13.56□□□□□ -0.24
SS18-213ENST00000579640 TRAPPC3LQ5T215 181 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 AKT1S1Q96B36 256 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 TBC1D2BQ9UPU7 963 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 BCORQ6W2J9 1755 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 CAMTA2O94983 1202 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 TCIRG1Q13488 830 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 MYD88Q99836 296 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 NARFQ9UHQ1 456 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 ZNF652Q9Y2D9 606 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 GTF3C3Q9Y5Q9 886 aa13.55□□□□□ -0.24
SS18-213ENST00000579640 ZBTB7BO15156 539 aaPredicted RBP13.54□□□□□ -0.24
SS18-213ENST00000579640 SCN7AQ01118 1682 aa13.54□□□□□ -0.24
SS18-213ENST00000579640 CLEC4GQ6UXB4 293 aa13.54□□□□□ -0.24
SS18-213ENST00000579640 DEFB132Q7Z7B7 95 aa13.54□□□□□ -0.24
SS18-213ENST00000579640 FLAD1Q8NFF5 587 aa13.54□□□□□ -0.24
SS18-213ENST00000579640 NUP98P52948 1817 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 ANKRD36CQ5JPF3 1778 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 NEURL1BA8MQ27 555 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 IGKV5-2P06315 115 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 TRIM28Q13263 835 aaKnown RBP13.53□□□□□ -0.24
SS18-213ENST00000579640 ARHGEF1Q92888 912 aaKnown RBP13.53□□□□□ -0.24
SS18-213ENST00000579640 ISCA1Q9BUE6 129 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 C4AP0C0L4 1744 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.53□□□□□ -0.24
SS18-213ENST00000579640 ZPR1O75312 459 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 GNAI3P08754 354 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 RFC4P35249 363 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 HLFQ16534 295 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 CCDC191Q8NCU4 936 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 UPF1Q92900 1129 aaKnown RBP eCLIP13.53□□□□□ -0.24
SS18-213ENST00000579640 TFCP2L1Q9NZI6 479 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 HDAC5Q9UQL6 1122 aa13.53□□□□□ -0.24
SS18-213ENST00000579640 AFDNP55196 1824 aaKnown RBP13.52□□□□□ -0.24
SS18-213ENST00000579640 ZNF827Q17R98 1081 aa13.52□□□□□ -0.25
SS18-213ENST00000579640 CWF19L2Q2TBE0 894 aaKnown RBP13.52□□□□□ -0.25
SS18-213ENST00000579640 ZBTB40Q9NUA8 1239 aa13.52□□□□□ -0.25
SS18-213ENST00000579640 STK32BQ9NY57 414 aa13.52□□□□□ -0.25
SS18-213ENST00000579640 QSER1Q2KHR3 1735 aa13.51□□□□□ -0.25
SS18-213ENST00000579640 USP42Q9H9J4 1324 aaKnown RBP13.51□□□□□ -0.25
SS18-213ENST00000579640 PHF14O94880 888 aa13.51□□□□□ -0.25
SS18-213ENST00000579640 GCKRQ14397 625 aa13.51□□□□□ -0.25
SS18-213ENST00000579640 CWC25Q9NXE8 425 aaPredicted RBP13.51□□□□□ -0.25
SS18-213ENST00000579640 ATP5J2-PTCD1G3V325 749 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 SLC15A2Q16348 729 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 USPL1Q5W0Q7 1092 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 AMIGO3Q86WK7 504 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 ZNF34Q8IZ26 560 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 MEIS3Q99687 375 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 USP44Q9H0E7 712 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 PPP4R2Q9NY27 417 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 C9orf78Q9NZ63 289 aaPredicted RBP13.5□□□□□ -0.25
SS18-213ENST00000579640 TUBGCP6Q96RT7 1819 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 UTYO14607 1347 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 GRM8O00222 908 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 PARP10Q53GL7 1025 aa13.5□□□□□ -0.25
SS18-213ENST00000579640 UBTFL1P0CB47 393 aaPredicted RBP13.49□□□□□ -0.25
SS18-213ENST00000579640 GNAI2P04899 355 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms