RNA–Protein interactions for RNA: ENST00000576613.5

CTDNEP1-212, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3

Gene CTDNEP1, Length 606 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-212ENST00000576613 NPC1L1Q9UHC9 1359 aa15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 SLX4Q8IY92 1834 aa15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 BTBD11A6QL63 1104 aa15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 CAMTA2O94983 1202 aa15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 A1BGP04217 495 aa15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 PRPF40BQ6NWY9 871 aaKnown RBP15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 DZIP3Q86Y13 1208 aaKnown RBP15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 MASTLQ96GX5 879 aa15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 CREBZFQ9NS37 354 aa15.64■□□□□ 0.09
CTDNEP1-212ENST00000576613 IQCA1LA6NCM1 817 aa15.63■□□□□ 0.09
CTDNEP1-212ENST00000576613 SRGNP10124 158 aa15.63■□□□□ 0.09
CTDNEP1-212ENST00000576613 ZNF652Q9Y2D9 606 aa15.63■□□□□ 0.09
CTDNEP1-212ENST00000576613 SCN4AP35499 1836 aa15.62■□□□□ 0.09
CTDNEP1-212ENST00000576613 DDNO94850 711 aaPredicted RBP15.61■□□□□ 0.09
CTDNEP1-212ENST00000576613 CLEC4GQ6UXB4 293 aa15.61■□□□□ 0.09
CTDNEP1-212ENST00000576613 NBPF5PQ86XG9 351 aaPredicted RBP15.61■□□□□ 0.09
CTDNEP1-212ENST00000576613 CNGB1Q14028 1251 aaPredicted RBP15.6■□□□□ 0.09
CTDNEP1-212ENST00000576613 CCDC93Q567U6 631 aa15.6■□□□□ 0.09
CTDNEP1-212ENST00000576613 CFAP53Q96M91 514 aa15.6■□□□□ 0.09
CTDNEP1-212ENST00000576613 POTEIP0CG38 1075 aa15.59■□□□□ 0.09
CTDNEP1-212ENST00000576613 POTEJP0CG39 1038 aa15.59■□□□□ 0.09
CTDNEP1-212ENST00000576613 NPR1P16066 1061 aa15.59■□□□□ 0.09
CTDNEP1-212ENST00000576613 PRKAR2BP31323 418 aa15.59■□□□□ 0.09
CTDNEP1-212ENST00000576613 LDHDQ86WU2 507 aa15.59■□□□□ 0.09
CTDNEP1-212ENST00000576613 RTF1Q92541 710 aaKnown RBP15.59■□□□□ 0.09
CTDNEP1-212ENST00000576613 MKRN1Q9UHC7 482 aaKnown RBP15.59■□□□□ 0.09
CTDNEP1-212ENST00000576613 RGL2O15211 777 aa15.58■□□□□ 0.08
CTDNEP1-212ENST00000576613 KCNQ3O43525 872 aa15.58■□□□□ 0.08
CTDNEP1-212ENST00000576613 SNRPA1P09661 255 aaKnown RBP15.58■□□□□ 0.08
CTDNEP1-212ENST00000576613 L3MBTL3Q96JM7 780 aaPredicted RBP15.58■□□□□ 0.08
CTDNEP1-212ENST00000576613 PHACTR3Q96KR7 559 aa15.58■□□□□ 0.08
CTDNEP1-212ENST00000576613 RSPH6AQ9H0K4 717 aa15.58■□□□□ 0.08
CTDNEP1-212ENST00000576613 USP16Q9Y5T5 823 aa15.58■□□□□ 0.08
CTDNEP1-212ENST00000576613 PIP4K2AP48426 406 aaPredicted RBP15.57■□□□□ 0.08
CTDNEP1-212ENST00000576613 TPTE2Q6XPS3 522 aa15.57■□□□□ 0.08
CTDNEP1-212ENST00000576613 NUDCQ9Y266 331 aa15.57■□□□□ 0.08
CTDNEP1-212ENST00000576613 CNTNAP1P78357 1384 aa15.57■□□□□ 0.08
CTDNEP1-212ENST00000576613 FKBP4Q02790 459 aaKnown RBP eCLIP15.56■□□□□ 0.08
CTDNEP1-212ENST00000576613 RTKN2Q8IZC4 609 aa15.56■□□□□ 0.08
CTDNEP1-212ENST00000576613 C7orf43Q8WVR3 580 aa15.56■□□□□ 0.08
CTDNEP1-212ENST00000576613 TAF1DQ9H5J8 278 aaPredicted RBP15.56■□□□□ 0.08
CTDNEP1-212ENST00000576613 NIP7Q9Y221 180 aaKnown RBP eCLIP15.56■□□□□ 0.08
CTDNEP1-212ENST00000576613 PASKQ96RG2 1323 aa15.55■□□□□ 0.08
CTDNEP1-212ENST00000576613 KLRG2A4D1S0 409 aaPredicted RBP15.55■□□□□ 0.08
CTDNEP1-212ENST00000576613 LAMB4A4D0S4 1761 aa15.54■□□□□ 0.08
CTDNEP1-212ENST00000576613 PRAMEF22A3QJZ6 481 aa15.54■□□□□ 0.08
CTDNEP1-212ENST00000576613 ALDH1B1P30837 517 aa15.54■□□□□ 0.08
CTDNEP1-212ENST00000576613 EAPPQ56P03 285 aaPredicted RBP15.54■□□□□ 0.08
CTDNEP1-212ENST00000576613 AIDAQ96BJ3 306 aa15.54■□□□□ 0.08
CTDNEP1-212ENST00000576613 HACL1Q9UJ83 578 aa15.54■□□□□ 0.08
CTDNEP1-212ENST00000576613 ZNF541Q9H0D2 1346 aa15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 TMEM88BA6NKF7 163 aa15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 U2AF1L5P0DN76 240 aaPredicted RBP15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 GTF2E1P29083 439 aaPredicted RBP15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 U2AF1Q01081 240 aaKnown RBP eCLIP15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 MCM10Q7L590 875 aa15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 PNMA8AQ86V59 439 aaPredicted RBP15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 ZNF277Q9NRM2 450 aaPredicted RBP15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 CLEC11AQ9Y240 323 aa15.53■□□□□ 0.08
CTDNEP1-212ENST00000576613 ADAMTSL1Q8N6G6 1762 aa15.52■□□□□ 0.08
CTDNEP1-212ENST00000576613 FOXN1O15353 648 aa15.52■□□□□ 0.08
CTDNEP1-212ENST00000576613 HTATSF1O43719 755 aaKnown RBP15.52■□□□□ 0.08
CTDNEP1-212ENST00000576613 EPHX2P34913 555 aa15.52■□□□□ 0.08
CTDNEP1-212ENST00000576613 FAM177BA6PVY3 158 aa15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 NBPF26B4DH59 902 aa15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 ITGBL1O95965 494 aaPredicted RBP15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 IARSP41252 1262 aaKnown RBP15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 CTCFP49711 727 aaPredicted RBP15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 NBPF10Q6P3W6 841 aaKnown RBP15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 NBPF15Q8N660 670 aa15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 PRDM10Q9NQV6 1147 aa15.51■□□□□ 0.07
CTDNEP1-212ENST00000576613 VEGFBP49765 207 aa15.5■□□□□ 0.07
CTDNEP1-212ENST00000576613 OLFM4Q6UX06 510 aa15.5■□□□□ 0.07
CTDNEP1-212ENST00000576613 GPC2Q8N158 579 aa15.5■□□□□ 0.07
CTDNEP1-212ENST00000576613 JDP2Q8WYK2 163 aa15.5■□□□□ 0.07
CTDNEP1-212ENST00000576613 NYXQ9GZU5 481 aa15.5■□□□□ 0.07
CTDNEP1-212ENST00000576613 RNF123Q5XPI4 1314 aa15.49■□□□□ 0.07
CTDNEP1-212ENST00000576613 FZD9O00144 591 aa15.49■□□□□ 0.07
CTDNEP1-212ENST00000576613 DCTN1Q14203 1278 aa15.49■□□□□ 0.07
CTDNEP1-212ENST00000576613 TAF7Q15545 349 aaPredicted RBP15.49■□□□□ 0.07
CTDNEP1-212ENST00000576613 CC2D2BQ6DHV5 1058 aa15.49■□□□□ 0.07
CTDNEP1-212ENST00000576613 SYNE4Q8N205 404 aa15.49■□□□□ 0.07
CTDNEP1-212ENST00000576613 PSMD1Q99460 953 aa15.49■□□□□ 0.07
CTDNEP1-212ENST00000576613 HLFQ16534 295 aa15.48■□□□□ 0.07
CTDNEP1-212ENST00000576613 CNTROBQ8N137 903 aa15.48■□□□□ 0.07
CTDNEP1-212ENST00000576613 NUP98P52948 1817 aa15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 RASSF10A6NK89 507 aa15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 NEFMP07197 916 aa15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 PPP2R1AP30153 589 aa15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 CRY2Q49AN0 593 aa15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 GRIPAP1Q4V328 841 aa15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 MAP1SQ66K74 1059 aaPredicted RBP15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 RPGRQ92834 1020 aaKnown RBP15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 KDM3BQ7LBC6 1761 aa15.47■□□□□ 0.07
CTDNEP1-212ENST00000576613 RIC1Q4ADV7 1423 aa15.46■□□□□ 0.07
CTDNEP1-212ENST00000576613 SNED1Q8TER0 1413 aa15.46■□□□□ 0.07
CTDNEP1-212ENST00000576613 ERVV-1B6SEH8 477 aa15.46■□□□□ 0.07
CTDNEP1-212ENST00000576613 LMOD1P29536 600 aaPredicted RBP15.46■□□□□ 0.07
CTDNEP1-212ENST00000576613 EIF6P56537 245 aaKnown RBP15.46■□□□□ 0.07
CTDNEP1-212ENST00000576613 DEFB115Q30KQ5 88 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms